View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4026_low_8 (Length: 345)
Name: NF4026_low_8
Description: NF4026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4026_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 14357216 - 14357538
Alignment:
| Q |
5 |
ttaattgagttttgaaattattttacggattttgattagatttggcgaagaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggtta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14357216 |
ttaattgagttttgaaattattttacggattttgattagatttggtgaagaagaaaaagttgggtagtgtgtgattatgaattgaagtgcaattgggtta |
14357315 |
T |
|
| Q |
105 |
agaaatgaacgtgagccatgcttcaattcactcagttgaagaagttccaactactgatggcgatggtggtgttgatattgctgaacgaaatagtgaggat |
204 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14357316 |
agaaatgaaggtgagccatgcttcaattcacccagttgaagaagttccaactactgatggcgatggtggtgttgatgttgctgaacgaaatagtgaggat |
14357415 |
T |
|
| Q |
205 |
gaaggatattcaaggcatgcccgatactgctggtggcctttctctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcact |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14357416 |
gaaggatattcaaggcatgcccgatactgctggtggcctttctctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcact |
14357515 |
T |
|
| Q |
305 |
agttattttcctaacatcaaaca |
327 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14357516 |
agttattttcctaacatcaaaca |
14357538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 29657784 - 29657452
Alignment:
| Q |
1 |
ttagttaattgagttttgaaattattttacggattttgattagatttggcgaagaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
29657784 |
ttagttaattgagttttgaaattattttatggattttgattagatttggtgaagaagaaaaagttgggtgatgtgtgattatgaattgaagtgaaattgg |
29657685 |
T |
|
| Q |
101 |
gttaagaaatgaacgtgagccatgcttcaattcactcagttgaagaagttccaactactg------atggcgatggtggtgttgatattgctgaacgaaa |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||| | ||||||||| ||| |
|
|
| T |
29657684 |
gttaagaaatgaatgtgagccatgcttcaattcaccaaattgaagaagttccaactactgatggtgatggtgatggtggtgttgttgttgctgaacaaaa |
29657585 |
T |
|
| Q |
195 |
tagtgaggatgaaggatattcaaggcatgcccgatactgctggtggcctttctctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||| |||||||| ||| || |||||||||||||| ||| |
|
|
| T |
29657584 |
tagtgaggatgaaggatattcaaggcatgcccaatagtgttggtggcctttatctgcgtattttgcaatttatattctttgttgatgcgctgtctgttat |
29657485 |
T |
|
| Q |
295 |
ggctttcactagttattttcctaacatcaaaca |
327 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
29657484 |
ggctttcactagttattttcgtaacatcaaaca |
29657452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 21730966 - 21731277
Alignment:
| Q |
16 |
ttgaaattattttacggattttgattagatttggcgaag---aagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggttaagaaatga |
112 |
Q |
| |
|
|||||||||||| | || |||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
21730966 |
ttgaaattatttgatgggttttgattagatttggtgaagtagaagaaaaagttgggtggtgtgtgattatgaattgaagtgtaattgggtgaagaaatga |
21731065 |
T |
|
| Q |
113 |
acgtgagccatgcttcaattcactcagttgaagaagttccaactactgatggcgatggtggtgttgatattgctgaacgaa--------------atagt |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||| || || || |
|
|
| T |
21731066 |
acgtgagccatgcttcaattcacccagttgaagaagttccaactact------gatggtggtgttgctgttgctgaacaaaacgtgaatgttcctatggt |
21731159 |
T |
|
| Q |
199 |
gaggatgaaggatattcaaggcatgcccgatactgctggtggcctttctctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctatggct |
298 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||||| || ||||| ||| || ||| |||| || |||| |||||| |||| ||||||| |
|
|
| T |
21731160 |
gaggatgaaggatattcaaggcatgcctggtactattggtggccttgctttgcgtgtttcacagtttgtttttgcggctgctgcgctatctgttatggct |
21731259 |
T |
|
| Q |
299 |
ttcactagttattttcct |
316 |
Q |
| |
|
| ||| ||| |||||||| |
|
|
| T |
21731260 |
tccaccagtgattttcct |
21731277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 5547487 - 5547328
Alignment:
| Q |
5 |
ttaattgagttttgaaattattttacggattttgattagatttggcgaagaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggtta |
104 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| | || ||||||||| |||||||||||||| | | |
|
|
| T |
5547487 |
ttaattgagttttgaaattattttatgggtattgattagatttggtgaagaagaaaaagttgggtggcatgagattatgaattgaagtgcaattggatga |
5547388 |
T |
|
| Q |
105 |
agaaatgaacgtgagccatgcttcaattcactcagttgaagaagttccaactactgatgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||| |
|
|
| T |
5547387 |
agaaatgaacgtgagccatgcttcaattcatccagttgaaaaagttcgaactattgatgg |
5547328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University