View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4027_low_2 (Length: 582)
Name: NF4027_low_2
Description: NF4027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4027_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Original strand, 5684260 - 5684819
Alignment:
| Q |
11 |
cacagacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatctacattt |
110 |
Q |
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| T |
5684260 |
cacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatctacattt |
5684359 |
T |
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| Q |
111 |
cccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcctcattc |
210 |
Q |
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| T |
5684360 |
cccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcctcattc |
5684459 |
T |
|
| Q |
211 |
tctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaacctaccctcttcacgttctcgccgttgcgatagacccaacaaaagacttcccta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
5684460 |
tctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgcaatagacccaacaaaagacttcccta |
5684559 |
T |
|
| Q |
311 |
gaaataacaatcctcaacgacttctacaagaactagcagaacgcnnnnnnntcactaacccaaaatcaaaatcaccaccaagacgttacattttaaaacc |
410 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684560 |
gaaataacaatcctcaacgacttctaaaagaactagcagaacgcaaaaaaatcactaacccaaaatcaaaatcaccaccaagacgttacattttaaaacc |
5684659 |
T |
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| Q |
411 |
cccactagacgataaaaaactcgcagaaagatttctcaacagtccacaactttcactaaaatcattcccattgttaagttcttgtctaccttcatcgcgc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5684660 |
cccactagacgataaaaaactcgcagaaagatttctcaacagtccacaactttcactaaaatcattcccattgttaagttcttgtctaccttcattgcgc |
5684759 |
T |
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| Q |
511 |
cttaacaatgccgataaattatggatcgatgagtatttactcgaagcgaaacaagccctt |
570 |
Q |
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| T |
5684760 |
cttaacaatgccgataaattatggatcgatgagtatttactcgaagcgaaacaagccctt |
5684819 |
T |
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