View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4027_low_3 (Length: 542)
Name: NF4027_low_3
Description: NF4027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4027_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Complemental strand, 42221999 - 42221507
Alignment:
| Q |
11 |
taatactggggtaccatgtttcagaatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcctactattggagatgttcat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221999 |
taatactggggtaccatgtttcagaatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcctactattggagatgttcat |
42221900 |
T |
|
| Q |
111 |
agccaaaaaaccaacaaatgaaattttcaaagaggaattaagcatgaacagatttgcatcagacatggatgaaaagcaattattgaaggttgttgatcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221899 |
agccaaaaaaccaacaaatgaaattttcaaagaggaattaagcatgaacagatttgcatcagacatggatgaaaagcaattattgaaggttgttgatcaa |
42221800 |
T |
|
| Q |
211 |
agacttgttaaccgttacgaatatatgacacaaaattccagcggtgatagtcatagtagtgagtctggcaacatcagctacagtgatgatagtaatgcac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42221799 |
agacttgttaaccgttacgaatatatgacacaaaattccagcggtgatagtcatagtagtgagtctggcaacatcagttacagtgatgatagtaaagcac |
42221700 |
T |
|
| Q |
311 |
attggatgtataaagctgaagaatgcataactgctgcaatgagagttggcttatcatgtgtagcacatcgtcccaaagatcggtggaccatgagagaagc |
410 |
Q |
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| T |
42221699 |
attggatgtataaagctgaagaatgcataactgctgcaatgagagttggcttatcatgtgtagcacatcgtcccaaagatcggtggaccatgagagaagc |
42221600 |
T |
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| Q |
411 |
cttatcaaaattgcatgaaattaagcggtatatactaggcttgtgaagttggtctgatgcctgctatttgtaataagcctcatgtggtccctt |
503 |
Q |
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| T |
42221599 |
cttatcaaaattgcatgaaattaagcggtatatactaggcttgtgaagttggtctgatgcctgctatttgtaataagcctcatgtggtccctt |
42221507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 42209748 - 42209282
Alignment:
| Q |
11 |
taatactggggtaccatgtttcagaatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcctactattggagatgttcat |
110 |
Q |
| |
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||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| || |
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| T |
42209748 |
taatattggggtgacatgtttcagaatatggtttaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcttactactagagatgttgat |
42209649 |
T |
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| Q |
111 |
agccaaaaaaccaacaaatgaaattttcaaagaggaattaagcatgaacagatttgcatcagacatggatgaaaagcaattattgaaggttgttgatcaa |
210 |
Q |
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||| ||||||||||||| ||||| |||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||| |
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| T |
42209648 |
agctgaaaaaccaacaaacgaaatgttcaaagaagaagtaagcatgaacagatttgtatcagacatggatgacaagcaattactaaaggttgttgatcaa |
42209549 |
T |
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| Q |
211 |
agacttgttaaccgttacgaatatatgacacaaaattccagcggtgatagtcatagtagtgagtctggcaacatcagctacagtgatgatagtaatgcac |
310 |
Q |
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|| ||| |||||| ||||||||| |||||||| ||| ||| |||||||||||||| |||||||||||| ||||||||| ||||||| |||||| |||| |
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| T |
42209548 |
aggcttattaaccaatacgaatattcgacacaaatttcaagcagtgatagtcatagtggtgagtctggcagcatcagctatagtgatggtagtaacgcac |
42209449 |
T |
|
| Q |
311 |
attggatgtataaagctgaagaatgcataactgctgcaatgagagttggcttatcatgtgtagcacatcgtcccaaagatcggtggaccatgagagaagc |
410 |
Q |
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|||||||| | |||||||| || |||||| || || | |||||||||||||| |||||| |||| |||| ||||||||||||||| |||||||||||||| |
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| T |
42209448 |
attggatgcacaaagctgaggagtgcatagctactactatgagagttggcttgtcatgtatagcccatcatcccaaagatcggtgtaccatgagagaagc |
42209349 |
T |
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| Q |
411 |
cttatcaaaattgcatgaaattaagcggtatatactaggcttgtgaagttggtctgatgcctgctat |
477 |
Q |
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||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||| |
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| T |
42209348 |
cttatcaaaattgcatggaattaagcagtctatactaggcttgtgatgttggtctgatgcctgctat |
42209282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 42191132 - 42190946
Alignment:
| Q |
26 |
atgtttcagaatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcctactattggagatgttcatagccaaaaaaccaac |
125 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |
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| T |
42191132 |
atgtttcagaatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttgggatcctactgttagagatgttcatagccagaaaaccaac |
42191033 |
T |
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| Q |
126 |
aaatgaaattttcaaagaggaattaagcatgaacagatttgcatcagacatggatgaaaagcaattattgaaggttgttgatcaaag |
212 |
Q |
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| T |
42191032 |
agatgagattttcaaagaaggattaagcatgaaaaaatttgtatcataaatggatgagaagaaattactgaaggttgttgatcaaag |
42190946 |
T |
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