View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4027_low_4 (Length: 495)
Name: NF4027_low_4
Description: NF4027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4027_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 188 - 449
Target Start/End: Complemental strand, 37956907 - 37956646
Alignment:
| Q |
188 |
aaacttttaagaaaatgcgtaatcttagaatgctccaattctatgatctctcttggagctcaaatgggacctttcatgcatttcttgagagtcttccgga |
287 |
Q |
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| T |
37956907 |
aaacttttaagaaaatgcgtaatcttagaatgctccaattctatgatctctcttggagctcaaatgggacctttcatgcatttcttgagagtcttccgga |
37956808 |
T |
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| Q |
288 |
tgctttaaaatttctttgctaggagaacttccctcaaagatatttgccgcaagctttcccagaaaatcttgttgcacttgaaatgccttctagtgatctt |
387 |
Q |
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| T |
37956807 |
tgctttaaaatttctttgttgggagaacttccctcaaagatatttgccgcaagctttcccagaaaatcttgttgcacttgaaatgccttctagtgatctt |
37956708 |
T |
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| Q |
388 |
gaacaactttgggtggtggatcaggtatttcatttaagctttatgttgtgtgcttatttcgg |
449 |
Q |
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| T |
37956707 |
gaacgactttggctggtggatcaggtatttcatttaagctttatgttgtgtgcttatttcgg |
37956646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 37957009 - 37956902
Alignment:
| Q |
48 |
aattacttaccgtaatggaaccacttttttcttgttttatctctaatagttcccaatgtttgcttgcttgtagggaacagatgcaatccggtgtatattc |
147 |
Q |
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| T |
37957009 |
aattacttaccgtaatggaacaacttttttcttgttttatctgtaataattcccaatgtttgcttgcttgtagggaacagatgcaatccggtgtatattc |
37956910 |
T |
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| Q |
148 |
ctaaactt |
155 |
Q |
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| T |
37956909 |
ctaaactt |
37956902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 442
Target Start/End: Original strand, 37930871 - 37931051
Alignment:
| Q |
266 |
catttcttgagagtcttccggatgctttaaaatttctttgctaggagaacttccctcaaagatatttgccgca--agcttt-cccagaaaatcttgttgc |
362 |
Q |
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| T |
37930871 |
catttcttaagattctcccggatgatttaaaatttcttcgttgggatagctttcctcaaagatctttgcccctggagttttgcccagaaaatcttgttaa |
37930970 |
T |
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| Q |
363 |
acttgaaatgccttctagtgatcttgaacaactttgggtggtggatcaggtatttcattt-aagctttatgttgtgtgctt |
442 |
Q |
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| T |
37930971 |
acttgatatgcctcatagccgtcttgaacaactttgggagggagatcaggtaattcatttcaagttttatgttgtgtgctt |
37931051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 37930706 - 37930824
Alignment:
| Q |
113 |
gcttgtagggaacagatgcaatccggtgtatattcctaaacttatgttatataatgaaagttcaactacatgctgaaacttttaagaaaatgcgtaatct |
212 |
Q |
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|||| ||||||||||||||||||| ||| |||||||| || || | |||| |||| || ||||||||| ||||||||| ||||| |||| |||||| |
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| T |
37930706 |
gcttttagggaacagatgcaatccagtgcatattcctggacacgtgcaaaataaagaaaattgaactacatgttgaaactttcaagaagatgcataatct |
37930805 |
T |
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| Q |
213 |
tagaatgctccaattctat |
231 |
Q |
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| T |
37930806 |
tagaatcatccagttctat |
37930824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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