View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4027_low_7 (Length: 249)

Name: NF4027_low_7
Description: NF4027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4027_low_7
NF4027_low_7
[»] scaffold0028 (1 HSPs)
scaffold0028 (21-169)||(20230-20381)
[»] scaffold0209 (1 HSPs)
scaffold0209 (21-149)||(15669-15797)
[»] chr5 (2 HSPs)
chr5 (1-169)||(22069606-22069778)
chr5 (38-91)||(19025619-19025671)
[»] chr3 (1 HSPs)
chr3 (17-137)||(15842519-15842640)
[»] chr6 (1 HSPs)
chr6 (1-167)||(2069235-2069393)
[»] chr4 (1 HSPs)
chr4 (66-191)||(48010099-48010222)
[»] chr2 (1 HSPs)
chr2 (3-49)||(29746516-29746562)
[»] chr7 (1 HSPs)
chr7 (38-82)||(2002203-2002247)
[»] scaffold0331 (1 HSPs)
scaffold0331 (66-169)||(1403-1505)


Alignment Details
Target: scaffold0028 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 20230 - 20381
Alignment:
Q  21 aacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaagattaaagtgactaaactttac 120  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||| | ||||||||| ||||||| || | | |||| |||||    
T  20230 aacaatccaaacaacattaaacaaaaatgccctttctatttcaagtaatgtcctgattctttttgtaccaataataaagattcaaattaataaattttac 20329  T
Q  121 cttaaaaaagtgaagtatgagagctgaag---tgtgaacgacggcgaaaccc 169  Q
    ||| | ||| |||||||||||||||||||   ||||||| |||| |||||||    
T  20330 cttgataaactgaagtatgagagctgaagaactgtgaaccacggtgaaaccc 20381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 15797 - 15669
Alignment:
Q  21 aacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaagattaaagtgactaaactttac 120  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||| | ||||||||| ||||||| || | | |||| |||||    
T  15797 aacaatccaaacaacattaaacaaaaatgccctttctatttcaagtaatgtcctgattctttttgtaccaataataaagattcaaattaataaattttac 15698  T
Q  121 cttaaaaaagtgaagtatgagagctgaag 149  Q
    ||| | ||| |||||||||||||||||||    
T  15697 cttgataaactgaagtatgagagctgaag 15669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22069606 - 22069778
Alignment:
Q  1 atacaaaaacctcatgagca-aacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaag 99  Q
    |||||||||||| || |||  |||||||||||||||||| ||||||| | ||||||||||||||| |||| |||||||||||| | ||||||||| ||||    
T  22069606 atacaaaaaccttataagcccaacaatccaaacaacattaaacaaaagtgccctttctatttcaagtaatgtcctgattctttatgtaccaataataaag 22069705  T
Q  100 attaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaag---tgtgaacgacggcgaaaccc 169  Q
    ||| || | | |||| |||||||| | ||| ||||||| |||||||||||   ||||||| |||| |||||||    
T  22069706 attcaaattaataaattttaccttgataaactgaagtaggagagctgaagaactgtgaaccacggtgaaaccc 22069778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 19025619 - 19025671
Alignment:
Q  38 tcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaa 91  Q
    ||||||||||||| |||||||||| || |||| |||||||||||||| ||||||    
T  19025619 tcaacaaaaatccactttctattt-aagtaatgtcctgattctttctataccaa 19025671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 15842640 - 15842519
Alignment:
Q  17 agcaaacaatccaaac-aacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaagattaaagtgactaaac 115  Q
    |||||||||||||||| || ||||||||||||||   |||||||||||| |||||||  |||| ||||| ||||||||||||||||| || ||| ||||     
T  15842640 agcaaacaatccaaactaagattcaacaaaaatcttatttctatttcaagtaatttctcgattttttctataccaataacaaagattcaaatgaataaat 15842541  T
Q  116 tttaccttaaaaaagtgaagta 137  Q
    ||||||||   |||||||||||    
T  15842540 tttacctttgtaaagtgaagta 15842519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2069235 - 2069393
Alignment:
Q  1 atacaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaaga 100  Q
    |||||| || || ||||||||| |||||||||||||||||||       |||||| |||||||| ||  |||||||| |||||| ||||||||||  | |    
T  2069235 atacaagaatcttatgagcaaataatccaaacaacattcaac-------ccctttatatttcaagtagcttcctgatcctttctataccaataaccta-a 2069326  T
Q  101 ttaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaagtgtgaacgacggcgaaac 167  Q
    || || ||| |||| |||||||| | |||||||||||  |||| ||||||| |||| ||||||||||    
T  2069327 ttcaaatgaataaattttaccttgagaaagtgaagtagcagaggtgaagtgcgaaccacggcgaaac 2069393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 48010222 - 48010099
Alignment:
Q  66 taatttcctgattctttctttaccaataacaaagattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaagtgtgaacgacggcgaa 165  Q
    |||||||||||||| |||| ||||  |||||| |||| || ||| |||| |||||||| | |||||  || | ||||||||||||| ||||||||| |||    
T  48010222 taatttcctgattcattctataccggtaacaatgattcaaatgaataaattttaccttgagaaagttgagcaggagagctgaagtgcgaacgacggtgaa 48010123  T
Q  166 acccgacattgcacagaactgagaac 191  Q
    ||| |  ||||||||||||| |||||    
T  48010122 acctg--attgcacagaactaagaac 48010099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 29746516 - 29746562
Alignment:
Q  3 acaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatc 49  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  29746516 acaaaaaccttgtgagcaaacaatccaaacaacattcaacaaaaatc 29746562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 2002203 - 2002247
Alignment:
Q  38 tcaacaaaaatcccctttctatttcaactaatttcctgattcttt 82  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  2002203 tcaacaaaaatcccctttctatttcaagtaatgtcctgattcttt 2002247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 1505 - 1403
Alignment:
Q  66 taatttcctgattctttctttaccaataacaaagattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaagtgtgaacgacggcgaa 165  Q
    ||||||||| |||||| || |||| |||||||||||| |  ||| |||| |||||||| | |||||  |||| ||||| |||||||  ||||||||||||    
T  1505 taatttccttattctt-ctataccgataacaaagattcatatgaataaattttaccttgagaaagttgagtaggagagttgaagtgcaaacgacggcgaa 1407  T
Q  166 accc 169  Q
    ||||    
T  1406 accc 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University