View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4028_high_1 (Length: 364)
Name: NF4028_high_1
Description: NF4028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4028_high_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 26734453 - 26734097
Alignment:
| Q |
8 |
gtgagaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactata |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734453 |
gtgacaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactata |
26734354 |
T |
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| Q |
108 |
ctaatcaccaccacagtaacattatcccttacacagcgacatcccacctttacaaaatgtaaaaacaccacaacagtgtcaaatacaaagacaagaaaac |
207 |
Q |
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||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26734353 |
ctaatcaccaccataataacattatcccttacacagtgacatcccacccttacaaaacgtaaaaacaccacaacagtgtcaaatacagagacaagaaaac |
26734254 |
T |
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| Q |
208 |
ccagagaatgatagagccgtttggccactgccaccccacccccaattnnnnnnnnnnnnttcagcatccaacacataaacttttacaccgcatttacgtc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
26734253 |
ccagagaatgatagagccgtttggccactgccaccccacccccaattgaaaaataaaaaaccagcatccaacacataaacttttacacctcatttacgtc |
26734154 |
T |
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| Q |
308 |
tctccttccaccttattgcctttaccgtcgtaaaaaatctcctgggttccaacacca |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734153 |
tctccttccaccttattgcctttaccgtcgtaaaaaatctcctgggttccaacacca |
26734097 |
T |
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