View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4029_low_10 (Length: 206)
Name: NF4029_low_10
Description: NF4029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4029_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 44015099 - 44015276
Alignment:
| Q |
13 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagaga |
112 |
Q |
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| T |
44015099 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagaga |
44015198 |
T |
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| Q |
113 |
accaagaaccttaattcctccaaaaagcatgttccttgaaagatcaagtgattgtaactgtgtcaaagcagacattga |
190 |
Q |
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| T |
44015199 |
accaagaaccttaattcctccaaaaagcatgttccttgaaagatcaagtgattgtaactgtgtcaaagcagacattga |
44015276 |
T |
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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 38800681 - 38800753
Alignment:
| Q |
13 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagat |
85 |
Q |
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| T |
38800681 |
gatatgaactagaagttagacttttgaagaatcgtgttactggaataggacctgataaattgttgtagaagat |
38800753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 38821048 - 38820966
Alignment:
| Q |
19 |
aactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgaga |
101 |
Q |
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| T |
38821048 |
aactagaagttgaagattagaagaatggtgttactggaataggacctgagaaattgttgtataagatattctgggaagtgaga |
38820966 |
T |
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