View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4029_low_2 (Length: 465)
Name: NF4029_low_2
Description: NF4029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4029_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 37769102 - 37769540
Alignment:
| Q |
18 |
ataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgtaacgcatgttctcgcc |
117 |
Q |
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| T |
37769102 |
ataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgcaacacatgttctcacc |
37769201 |
T |
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| Q |
118 |
agctaaaaagggttggtaaatctcgcaaagatgtgagttcaactcttgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37769202 |
agctaaaaagggttggtaaatctcgcaaagatgtgagttcaactctcgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggctat |
37769301 |
T |
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| Q |
218 |
ggtgaaccctgggacccaactcacctaaccttttattcgc-----agctgcaattgcgatcgcaaccaaatcataaagatagttaaaaggggtgctccta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37769302 |
ggtgaaccctgggacccaactcacctaaccttttattcgcagcgtagctgcaattgcgatcacaaccaaatcataaagatagttaaaaggggtgctccta |
37769401 |
T |
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| Q |
313 |
agaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttgttatctattcttcccaattgggaggtagctgagattggaagaaacctga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37769402 |
agaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttgttatctattcttcccaattgggaggtagctgatattggaagaaacctga |
37769501 |
T |
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| Q |
413 |
aacatctgttcatgtcaaattttcctgctcttttctctg |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
37769502 |
aacatctgttcatgtcaaattttcctgctcttttctctg |
37769540 |
T |
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