View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4029_low_3 (Length: 397)
Name: NF4029_low_3
Description: NF4029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4029_low_3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 32400787 - 32400407
Alignment:
| Q |
17 |
acaacatcacacagaggattatcccagacaaaataaacgtgcacttggttcctcactcacatgatgatgttggttggcttaagaccgttgatcagtacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400787 |
acaacatcacacagaggattatcccagacaaaataaacgtgcacttggttcctcactcacatgatgatgttggttggcttaagaccgttgatcagtacta |
32400688 |
T |
|
| Q |
117 |
cgttggatccaacaactccattagagtttgtttctgtcttcctgatttttactattttttgctgcaaattgttattcattattgtcatgttgttgggtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400687 |
cgttggatccaacaactccattagagtttgtttctgtcttcctgatttttactattttttgctgcaaattgttattcattattgtcatgttgttgggtag |
32400588 |
T |
|
| Q |
217 |
ggtgcatgtgtgcagaacgtgcttgattctgttatatcatcactcttggaggatccaaatcgcaagtttatctatgttgaaatggtaatcataatattaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400587 |
ggtgcatgtgtgcagaacgtgcttgattctgttatatcatcactcttggaggatccaaatcgcaagtttatctatgttgaaatggtaatcataatattaa |
32400488 |
T |
|
| Q |
317 |
tcaaatgctactaaagttttcannnnnnngtaaatggcaagaactagaagtgtttgagtttaattgggttgtttttattat |
397 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400487 |
tcaaatgctactaaagttttcatttttttgtaaatggcaagaactagaagtgtttgagtttaattgggttgtttttattat |
32400407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 32386550 - 32386495
Alignment:
| Q |
76 |
catgatgatgttggttggcttaagaccgttgatcagtactacgttggatccaacaa |
131 |
Q |
| |
|
|||||||||||||| ||| | ||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
32386550 |
catgatgatgttgggtggttgaagactgttgatcagtactatgttggttccaacaa |
32386495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 31848361 - 31848447
Alignment:
| Q |
52 |
aacgtgcacttggttcctcactcacatgatgatgttggttggcttaagaccgttgatcagtactacgttggatccaacaactccatt |
138 |
Q |
| |
|
||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
31848361 |
aacgttcacttggttccacattcccatgatgatgttggttggcttaagactgttgatcaatactatgttggctccaacaattccatt |
31848447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 45068661 - 45068599
Alignment:
| Q |
76 |
catgatgatgttggttggcttaagaccgttgatcagtactacgttggatccaacaactccatt |
138 |
Q |
| |
|
|||||||||||||| ||| | || ||| ||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
45068661 |
catgatgatgttggatggttgaaaaccattgatcagtactatgttggttccaacaacaccatt |
45068599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University