View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4029_low_7 (Length: 234)
Name: NF4029_low_7
Description: NF4029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4029_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 23675395 - 23675606
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
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| T |
23675395 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
23675494 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggaca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23675495 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagacgaggttggaaatgaggtgggattatgaataggaca |
23675594 |
T |
|
| Q |
203 |
aaggagtcggaa |
214 |
Q |
| |
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|||||||||||| |
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| T |
23675595 |
aaggagtcggaa |
23675606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 26458073 - 26457869
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |
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| T |
26458073 |
agaaagatggaaatgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatctt |
26457974 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggaca |
202 |
Q |
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| T |
26457973 |
ttattgatgagaatttgaaggaggttaatctgaagatgaaagaaatgacaatcaaagatcaaaaggaggttggaaatggggtgggattatgaataggact |
26457874 |
T |
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| Q |
203 |
aagga |
207 |
Q |
| |
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||||| |
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| T |
26457873 |
aagga |
26457869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 27641169 - 27641346
Alignment:
| Q |
3 |
agaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatctt |
102 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| ||| |||||||||| ||||||||||||||| || | | |
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| T |
27641169 |
agaaagaaggaaatgaccaatatcattcatcatttcattcataccacagaatttaatggatatttaatgagcaaacctgatcttaatgatttgtcctatg |
27641268 |
T |
|
| Q |
103 |
ttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatg |
180 |
Q |
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|||||||||||||||||| |||||| ||| |||||||||| |||| |||| ||||| ||||||||||||||||| |
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| T |
27641269 |
ttattgatgagaatttgagggaggtcaatcaaaagatgaaaggaatgcgaattgaagattgagaggaggttggaaatg |
27641346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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