View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_24 (Length: 342)
Name: NF4030_high_24
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 42213010 - 42212653
Alignment:
| Q |
1 |
aggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataattnnnnnnnnn-tgtggaacaaactgtaaagtataggataagttggat |
99 |
Q |
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| T |
42213010 |
aggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataattaaaaaaaaaatgtggaacaaactgtaaagtataggataagttggat |
42212911 |
T |
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| Q |
100 |
taagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacgtgaattgcagtgtg |
199 |
Q |
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| T |
42212910 |
taagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattgcagtgtg |
42212811 |
T |
|
| Q |
200 |
aaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattga-----------------ttatat |
282 |
Q |
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| T |
42212810 |
aaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattgattatgtcatatcctatcttatat |
42212711 |
T |
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| Q |
283 |
gtgatgctttttgtacttaaaactaggtaccgataaatagaattcgtcctatgcttct |
340 |
Q |
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| T |
42212710 |
gtgatgctttttgtacttaaaactaggtaccaataaatagaattcgtcgtatgattct |
42212653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 271
Target Start/End: Complemental strand, 42205753 - 42205553
Alignment:
| Q |
67 |
ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc |
164 |
Q |
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| T |
42205753 |
ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc |
42205655 |
T |
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| Q |
165 |
atcaaacaagcaaattacacgtgaattgcagtgtgaaatggataacaattaacatcatgttacaaattcaccta---tggtttttactatctatttattc |
261 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| || |||| ||||||||||||||||| | ||||| ||||||||||||| |
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| T |
42205654 |
atcaaacaagcaaattacacatgaatt-cagtgtgaaatgga-------tatcatcgtgttacaaattcacctaattaaggttttattatctatttattc |
42205563 |
T |
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| Q |
262 |
acacatattt |
271 |
Q |
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|||||||||| |
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| T |
42205562 |
acacatattt |
42205553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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