View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4030_high_28 (Length: 314)
Name: NF4030_high_28
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 244096 - 244383
Alignment:
| Q |
11 |
cataggaggaggacacaagagtaaatcatattcatcatcagtgactccaacaacaagaaggagcaaatcatggcctggtcttccacggggcgaagaaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244096 |
cataggaggaggacacaagagtaaatcatattcatcatcagtgactccaacaacaagaaggagcaaatcatggcctggtcttccacggggcgaagaaaat |
244195 |
T |
|
| Q |
111 |
agacgaaagaaagtggccccggagggatgcttttcggtgtacgttggacctcaaatgcaaaggtttgtgatcaaaactgagtatgctaatcatcctttgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244196 |
agacgaaagaaagtggccccggagggatgcttttcggtgtacgttggacctcaaatgcaaaggtttgtgatcaaaactgagtatgctaatcatcctttgt |
244295 |
T |
|
| Q |
211 |
tcaagatgttgcttgaagaagctgaatcagaatatggttatagctgccaaggacctttggctcttccttgtaatgttgatgtctttta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244296 |
tcaagatgttgcttgaagaagctgaatcagaatatggttatagctgccaaggacctttggctcttccttgtaatgttgatgtctttta |
244383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University