View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_30 (Length: 292)
Name: NF4030_high_30
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 38075695 - 38075970
Alignment:
| Q |
1 |
agagatccaaggaaaaaagtgaatagaggactttgtctaacatgcacaagtaaaatggtattacattatgcataaatatcattttttatcattgaattga |
100 |
Q |
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| T |
38075695 |
agagatccaaggaaaaaagtgaatagagtactttatctaacatgtacaagtaaaatggtattgcattatgtataaatatcattttttatcattgaattga |
38075794 |
T |
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| Q |
101 |
aaaatcatatcatatttaatttaatttaatagtgagatttatttcacttgtgtataatagaattggccaaaacatatctaagtaaaacgaattggccaaa |
200 |
Q |
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| T |
38075795 |
aaaatcatatcatatttaatttaatttaatagtgagatttatttcacttgtggataatagaattggccaaaacatatctaagaaaaacgaattggccaaa |
38075894 |
T |
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| Q |
201 |
acatggatatgttcttggcaaaatcacaccttaaagaaaatagtttgaatttaggtttatcgataagggaacttga |
276 |
Q |
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| T |
38075895 |
acatggatatgttcttggcaaaatcacaccttaaagaaaatagtttgaatctaggtttatcgataacggaacttga |
38075970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 26688663 - 26688760
Alignment:
| Q |
32 |
tttgtctaacatgcacaagtaaaatggtattacattatgcataaatatcattttttatcattgaattgaaaaatcatatcatatttaatttaatttaat |
130 |
Q |
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| T |
26688663 |
tttgtctaacatgcacaagtaaaatgatcttacatcatctaaaaatatc-tttttcatcgttgaatcaataaaccatatgatatctcatttaatttaat |
26688760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 41957468 - 41957579
Alignment:
| Q |
33 |
ttgtctaacatgcacaagtaaaatggtattacattatgcataaatatc-attttttatcattgaattgaaaaatcatatcatatttaatttaatttaata |
131 |
Q |
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| T |
41957468 |
ttgtctaacatgcacaagtaaaatggtcttgcaccatgcacaaatgtctaatttccgtcattggattaaaaagtcatatcatattttatttaatttaatc |
41957567 |
T |
|
| Q |
132 |
gtgagatttatt |
143 |
Q |
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|||| ||||||| |
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| T |
41957568 |
gtgaaatttatt |
41957579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 2188798 - 2188746
Alignment:
| Q |
91 |
attgaattgaaaaatcatatcatatttaatttaatttaatagtgagatttatt |
143 |
Q |
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| T |
2188798 |
attgaattaaaaaatcatatcatatttcatttaatttaattgtaagatttatt |
2188746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 23776793 - 23776748
Alignment:
| Q |
83 |
tttttatcattgaattgaaaaatcatatcatatttaatttaattta |
128 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
23776793 |
tttttattattgaatcaataaatcatatcatatttaatttaattta |
23776748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 8624804 - 8624846
Alignment:
| Q |
102 |
aaatcatatcatatttaatttaatttaatagtgagatttattt |
144 |
Q |
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| T |
8624804 |
aaatcatatcatattttctttaatttaatggtgagatttattt |
8624846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 7602824 - 7602852
Alignment:
| Q |
31 |
ctttgtctaacatgcacaagtaaaatggt |
59 |
Q |
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| T |
7602824 |
ctttgtctaacatgcacaagtaaaatggt |
7602852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 32987780 - 32987724
Alignment:
| Q |
83 |
tttttatcattgaattgaaaaatcatatcatatttaatttaatttaatagtgagatt |
139 |
Q |
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||||| |||||||||| |||| | ||||||||||| |||||||||||| ||||||| |
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| T |
32987780 |
tttttgtcattgaattaaaaagttatatcatattttatttaatttaatgatgagatt |
32987724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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