View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_33 (Length: 285)
Name: NF4030_high_33
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 25934486 - 25934212
Alignment:
| Q |
1 |
cctattgtagctgcttccatcaatctccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934486 |
cctattgtagctgcttccatcaatttccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaa |
25934387 |
T |
|
| Q |
101 |
ccacttctcctaccagattctagcatcaaaccaccattcacacctgaacttctagctgcagaaatagagcttctagcacctgataaaactgaatcaccac |
200 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934386 |
ccacttctcctacctgattctaacatcaaaccaccattcacacctgaacttctagctgcagaaatagagcttctagcacctgataaaactgaatcaccac |
25934287 |
T |
|
| Q |
201 |
catcttcagatccaaatatagctccacccctgaaactgcacagagatcttgatcttgacacacctccatgatgat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934286 |
catcttcagatccaaatatagctccacccctgaaactgcacagagatcttgatcttgacacacctccatgatgat |
25934212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 16704009 - 16704111
Alignment:
| Q |
13 |
gcttccatcaatctccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaaccacttctccta |
112 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16704009 |
gcttccatcaatttccataacaccactcttcctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactataaccacttctccta |
16704108 |
T |
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| Q |
113 |
cca |
115 |
Q |
| |
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||| |
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| T |
16704109 |
cca |
16704111 |
T |
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