View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_4 (Length: 643)
Name: NF4030_high_4
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 627
Target Start/End: Original strand, 42027974 - 42028592
Alignment:
| Q |
13 |
aatattaaactatgatttgtaagtttcaccgattcgattgtggtccaattctaacaacattcattcaagaccatcattcatgatcatataagatatgcag |
112 |
Q |
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| T |
42027974 |
aatattaaactatgatttgtaagtttcaccgattcgattgtggtccaattctaacaacattcattcaagaccatcattcatgatcatataagatatgcag |
42028073 |
T |
|
| Q |
113 |
gcagatacttacttacaatgaagggcatgaaaaggagtaaattaatttgtacatgaacatgacgaagaagaagttattattatatcataaacataggaac |
212 |
Q |
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| T |
42028074 |
gcagatacttacttacattgatgggcatgaaaaggagtaaattaatttgtacatgaacatgacgaagaagaagttattattatatcataaacataggaac |
42028173 |
T |
|
| Q |
213 |
atatatgtggttggaataccaatgtgtatgtggnnnnnnnnnnnnnnn----gcggcagatgtgggggagaggagctagaaagggacgtgtgcatggggt |
308 |
Q |
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| T |
42028174 |
atatatgtggttggaataccaatgtgtatgtgggagagagagagagagagaggcggcagatgtgggggagaggagctagaaagggacgtgtgcatggggt |
42028273 |
T |
|
| Q |
309 |
gatagctttcacacactcacctgttgttttcaatagttaaagagggtcttgtcttgtggtgttggttgatctcaaaacaactttttcaaataaattttcc |
408 |
Q |
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| T |
42028274 |
gatagctttcacacactcacctgttgttttcaatagttaaagagggtcttgtcttgtggtgttggttgatctcaaaacaactttttcaaataaattttcc |
42028373 |
T |
|
| Q |
409 |
taaatttccgaacaaaggaacaaccaaaaccccactaggcaccagcgaaaccctaaataaacacactatctctcttccgtttccttagggctcctcgttc |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42028374 |
taaatttccgaacaaaggaacaaccaaaaccccactaggcaccagtgaaaccctaaataaacacactatctctcttccgtttccttagggctcctcgctc |
42028473 |
T |
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| Q |
509 |
attcaacagtcagtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttac |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028474 |
attcaacagtcagtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttac |
42028573 |
T |
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| Q |
609 |
ttttcttgatttgacaact |
627 |
Q |
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| T |
42028574 |
ttttcttgatttgacaact |
42028592 |
T |
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