View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_42 (Length: 255)
Name: NF4030_high_42
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8797922 - 8798066
Alignment:
| Q |
1 |
ttacagaagaagggttagtgtgaggcattggtgccnnnnnnnggttttaccttcccaatgaaaactctaccttcctttttctgcactgccactgataccc |
100 |
Q |
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| T |
8797922 |
ttacagaagaagggttagtgtgaagcattggtgccaaaaaaaggttttaccttcccaatgaaaactctaccttcctttttctgcactgccactgataccc |
8798021 |
T |
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| Q |
101 |
ctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
145 |
Q |
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| T |
8798022 |
ctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
8798066 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 8798096 - 8798159
Alignment:
| Q |
175 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798096 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttac |
8798159 |
T |
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