View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_6 (Length: 570)
Name: NF4030_high_6
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 42934500 - 42934157
Alignment:
| Q |
1 |
taaacttaagaagtagtactatcatgtaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgctaattagttcc |
100 |
Q |
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| T |
42934500 |
taaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgctaattagttcc |
42934401 |
T |
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| Q |
101 |
accataaaaactttcta----------------cttctattagtggatttcattcagcacatgttatatccaaacatacataatcaagtactaaaaccat |
184 |
Q |
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| T |
42934400 |
accataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacataatcaagtactaaaaccat |
42934301 |
T |
|
| Q |
185 |
aacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaagcaagcaat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42934300 |
aacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaagcaagaaat |
42934201 |
T |
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| Q |
285 |
gatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
328 |
Q |
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| T |
42934200 |
gatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
42934157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 326 - 557
Target Start/End: Complemental strand, 42934135 - 42933907
Alignment:
| Q |
326 |
ataattatatatagaatcaaagtggttaattcaaccaaagaaacacaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
425 |
Q |
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| T |
42934135 |
ataattatatatagaatcaatgtgattaattcaaccaaagaaactcaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
42934036 |
T |
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| Q |
426 |
taacaaacctggtgccccggatcaatactacttctgctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
525 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934035 |
taacaaacctggtgccccggatcaatacta---ctgctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
42933939 |
T |
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| Q |
526 |
gatcatcaccaacacgttcctgatcttcttca |
557 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42933938 |
gatcatcaccaacacgttcctgatcttcttca |
42933907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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