View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_high_60 (Length: 227)
Name: NF4030_high_60
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_high_60 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 32837371 - 32837595
Alignment:
| Q |
7 |
atagccacacttacggcatatgcttggcaattggaaa-tagaaaaataaaaacaaatgggctttgacccaatcattttggtgttgacccgtgaaaga--- |
102 |
Q |
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| T |
32837371 |
atagccacacttacggcatatgcttggcaattggaaaatagaaaaataaaaacaaatgggctttgacccaaccattttggtgttgactcgtgaaagaaaa |
32837470 |
T |
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| Q |
103 |
-aaagaaactagctaggttacctgaacctgtnnnnnnnggaagcaagtgacacaaagaa-aagaagattgatggcttggcacaaagctactttcagcaat |
200 |
Q |
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| T |
32837471 |
gaaagaaactagctaggttacctgaacctat--aaaaaggaagcaagtgacacaaataagaggaggattgacggcttggcacaaagcgactttcagcaat |
32837568 |
T |
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| Q |
201 |
cacgttttcggcagagaggaaggaagc |
227 |
Q |
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| T |
32837569 |
cacgttttcggcagagaggaaggaagc |
32837595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 2371701 - 2371764
Alignment:
| Q |
7 |
atagccacacttacggcatatgcttggcaattgg-aaatagaaaaataaaaacaaatgggcttt |
69 |
Q |
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| T |
2371701 |
atagccacacttacggtatatgcttggcaattggaaaatagtaaaataaaaacaaatgggcttt |
2371764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 2371886 - 2371922
Alignment:
| Q |
191 |
tttcagcaatcacgttttcggcagagaggaaggaagc |
227 |
Q |
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| T |
2371886 |
tttcggcaatcacgttttcggcagagaggaaggaagc |
2371922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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