View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_1 (Length: 978)
Name: NF4030_low_1
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 734; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 141 - 964
Target Start/End: Original strand, 930603 - 931425
Alignment:
| Q |
141 |
ttctgattttgagtagaggaaactgaatctttgatgatgtttgcaatgtttttcgtgtgtattgatgcacctgatttgaggatattgaactatatgaaaa |
240 |
Q |
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| T |
930603 |
ttctgattttgagtagaggaaactgaatctgcgatgatgtttgcaatgttttttgtgtgtattgatgcacctgatttgaggatattgaactatatgaaaa |
930702 |
T |
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| Q |
241 |
gaagaagaaaaagcgataattttgagaggaggaaggttcgtcagttttggaattgttgattacataactccactgaataccatgatcatacatcaatgaa |
340 |
Q |
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| T |
930703 |
gaagaaaaaaaag-gataattttgagtggaggaaggttcgtcagttttggaattgttgattacataactccactgaataccatgatcatacatcaatgaa |
930801 |
T |
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| Q |
341 |
aactgtttcttatgtcataattgagcggtaattcaagaactttaaatgagatgttttacgtatctcatgatgtatcaaaaattgtgttatgccaatggtt |
440 |
Q |
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| T |
930802 |
aactgtttcttatgtcataattgagcggtaattcaagaactttaaatgagatgttttacgtatctcatgatgtatcaaaaattgtgttatgccagtggtt |
930901 |
T |
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| Q |
441 |
atcgtgttcgataaattggtaggtcatgactcatgagtgaccagacagcccttcaagatatgaatgtgtttaccattattatgaagaatgtagtagtttt |
540 |
Q |
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| T |
930902 |
atcgtgttcgataaattgttaggtcatgactcatgagtgaccagacagcccttcaagatatgaatgtgtttaccattattatgaagaatgtagtagtttt |
931001 |
T |
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| Q |
541 |
agttatgtattttcctttataatagtnnnnnnnttggatcaaggtgacgttttgcaatttgttctgtagtcttggtttattatgcatctannnnnnnctt |
640 |
Q |
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| T |
931002 |
agttatgtattttcctttataatagtaaaaagattggatcaaggtgacgttttgcaatttgttctgtagtcttggtttattatgcatctatttttttctt |
931101 |
T |
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| Q |
641 |
tcgtcaacctgtgactcatgtttttcatgatgatattgtggtttttgcatgatttctgagcagtgaaggtttgcatgatttgtgaaaatgtcccctgact |
740 |
Q |
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| T |
931102 |
tggtcaacctgtgactcatgtttttcatgatgatattgtggtttttgcatgatttctgagcagtgaaggtttgcatgatttgtgaaaatgtcccctgact |
931201 |
T |
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| Q |
741 |
tggagataaagagccaattggagaatataaacgcccctgcattttcggaactaaatgttcttgagcctatggaaaacggtgaggctgatgattgtgtccg |
840 |
Q |
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| T |
931202 |
tggagataaagagccaattggagaatataaacgcccctgcattttcggaactaaatgttcttgagcctagggaaaacggtgaggctgatgattgtgcccg |
931301 |
T |
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| Q |
841 |
ggaaatgatgtcaattgaacaaactcctctgtgtaagggagataaggatgtagaagttaatatcactgagtgcaaaaattctggcaaagctttgatggtg |
940 |
Q |
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| T |
931302 |
ggaaatgatgtcaattgaacaaactcctctgtgtaagggagataaggatgtagaagttaatatcactgagtgcaaaaattctggcaaagctttgatggtg |
931401 |
T |
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| Q |
941 |
ttagatttcggtgaggatgatgtc |
964 |
Q |
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| T |
931402 |
ttagatttcggtgaggatgatgtc |
931425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 930486 - 930570
Alignment:
| Q |
17 |
caacatttgtttaaatccgtttatctttgtatatatctttctaaattattatttcaaagtctgatttttggataagagtggataa |
101 |
Q |
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| T |
930486 |
caacatttgtttaaatccgtttatctttgtatatatctttctaaattattgtttcaaagtctgatttttggataagagtggataa |
930570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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