View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_10 (Length: 444)

Name: NF4030_low_10
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_10
NF4030_low_10
[»] chr4 (42 HSPs)
chr4 (25-155)||(46944087-46944220)
chr4 (25-134)||(22405077-22405190)
chr4 (27-141)||(50859210-50859327)
chr4 (25-136)||(21263556-21263671)
chr4 (25-130)||(35033797-35033905)
chr4 (341-382)||(44633159-44633200)
chr4 (25-63)||(3121269-3121307)
chr4 (25-142)||(35292086-35292206)
chr4 (340-382)||(35998180-35998222)
chr4 (340-382)||(39052964-39053006)
chr4 (340-388)||(42185859-42185907)
chr4 (25-127)||(31227739-31227843)
chr4 (25-142)||(41223629-41223750)
chr4 (25-63)||(4292690-4292728)
chr4 (340-382)||(17237045-17237087)
chr4 (340-382)||(25149453-25149495)
chr4 (340-382)||(29815160-29815202)
chr4 (340-382)||(38976993-38977035)
chr4 (340-382)||(41203739-41203781)
chr4 (342-382)||(22129136-22129176)
chr4 (340-382)||(1796305-1796347)
chr4 (340-382)||(3686013-3686055)
chr4 (340-382)||(10099788-10099830)
chr4 (340-378)||(12619694-12619732)
chr4 (340-382)||(18509843-18509885)
chr4 (340-382)||(18849822-18849864)
chr4 (340-382)||(22020573-22020615)
chr4 (340-382)||(22872451-22872493)
chr4 (340-382)||(29550790-29550832)
chr4 (340-382)||(37309700-37309742)
chr4 (340-382)||(38319913-38319955)
chr4 (340-382)||(42024264-42024306)
chr4 (340-382)||(42132815-42132857)
chr4 (340-382)||(47787910-47787952)
chr4 (340-382)||(49448843-49448885)
chr4 (340-382)||(51572291-51572333)
chr4 (340-382)||(55360411-55360453)
chr4 (340-377)||(20964351-20964388)
chr4 (340-388)||(4357564-4357612)
chr4 (340-376)||(36047163-36047199)
chr4 (74-130)||(41809872-41809928)
chr4 (340-376)||(49218845-49218881)
[»] chr2 (35 HSPs)
chr2 (20-129)||(44246367-44246479)
chr2 (25-136)||(28219059-28219174)
chr2 (25-142)||(10354296-10354416)
chr2 (25-130)||(28199194-28199302)
chr2 (340-382)||(4794575-4794617)
chr2 (340-379)||(5710998-5711037)
chr2 (25-118)||(1499214-1499310)
chr2 (340-386)||(3100398-3100444)
chr2 (340-382)||(3199900-3199942)
chr2 (340-382)||(7213477-7213519)
chr2 (25-63)||(7444727-7444765)
chr2 (340-382)||(7931559-7931601)
chr2 (340-382)||(9472424-9472466)
chr2 (340-382)||(23684961-23685003)
chr2 (340-382)||(28301436-28301478)
chr2 (340-376)||(5212021-5212057)
chr2 (342-382)||(33751463-33751503)
chr2 (343-382)||(37529137-37529176)
chr2 (341-388)||(44284383-44284430)
chr2 (340-382)||(1908557-1908599)
chr2 (340-378)||(6685726-6685764)
chr2 (340-382)||(10069648-10069690)
chr2 (340-382)||(13222070-13222112)
chr2 (340-382)||(19515883-19515925)
chr2 (340-382)||(28108438-28108480)
chr2 (340-382)||(28572210-28572252)
chr2 (340-382)||(28844061-28844103)
chr2 (340-382)||(33880160-33880202)
chr2 (340-382)||(41436081-41436123)
chr2 (340-382)||(43077789-43077831)
chr2 (340-382)||(43182276-43182318)
chr2 (340-382)||(44424326-44424368)
chr2 (340-381)||(4283082-4283123)
chr2 (100-149)||(6479307-6479356)
chr2 (340-380)||(3487398-3487438)
[»] scaffold0224 (1 HSPs)
scaffold0224 (25-136)||(12397-12511)
[»] chr1 (38 HSPs)
chr1 (25-136)||(42934260-42934374)
chr1 (25-131)||(42365923-42366032)
chr1 (25-142)||(48046439-48046559)
chr1 (25-128)||(15581607-15581713)
chr1 (28-150)||(39793621-39793746)
chr1 (16-142)||(34969807-34969935)
chr1 (25-130)||(41404109-41404217)
chr1 (25-62)||(16302758-16302795)
chr1 (340-382)||(2886173-2886215)
chr1 (340-382)||(4466218-4466260)
chr1 (340-382)||(8327719-8327761)
chr1 (340-382)||(26755978-26756020)
chr1 (340-382)||(36232853-36232895)
chr1 (340-382)||(50333937-50333979)
chr1 (340-382)||(52382450-52382492)
chr1 (92-131)||(50678131-50678170)
chr1 (340-382)||(705413-705455)
chr1 (340-382)||(2219512-2219554)
chr1 (340-382)||(2571365-2571407)
chr1 (340-382)||(3718913-3718955)
chr1 (340-382)||(10587645-10587687)
chr1 (340-382)||(16451633-16451675)
chr1 (340-382)||(16460786-16460828)
chr1 (340-382)||(17342830-17342872)
chr1 (340-382)||(18186270-18186312)
chr1 (340-382)||(24131464-24131506)
chr1 (340-382)||(27210031-27210073)
chr1 (340-382)||(28277102-28277144)
chr1 (340-382)||(28908095-28908137)
chr1 (340-382)||(29225755-29225797)
chr1 (340-382)||(29756206-29756248)
chr1 (340-382)||(33149275-33149317)
chr1 (340-382)||(37925310-37925352)
chr1 (25-63)||(50678185-50678223)
chr1 (340-372)||(29225472-29225504)
chr1 (340-376)||(46363475-46363511)
chr1 (27-63)||(49764940-49764976)
chr1 (346-382)||(52146725-52146761)
[»] scaffold0022 (2 HSPs)
scaffold0022 (25-149)||(44080-44207)
scaffold0022 (25-149)||(77801-77928)
[»] chr5 (29 HSPs)
chr5 (25-136)||(4943568-4943683)
chr5 (25-130)||(30084941-30085049)
chr5 (25-142)||(11617275-11617395)
chr5 (29-132)||(9159479-9159587)
chr5 (340-382)||(8369760-8369802)
chr5 (340-382)||(19889597-19889639)
chr5 (74-132)||(5247871-5247929)
chr5 (340-382)||(15254767-15254809)
chr5 (340-382)||(17243018-17243060)
chr5 (340-378)||(36446751-36446789)
chr5 (344-382)||(43525480-43525518)
chr5 (341-382)||(22582936-22582977)
chr5 (340-376)||(25108581-25108617)
chr5 (340-376)||(25111212-25111248)
chr5 (340-376)||(25167673-25167709)
chr5 (340-376)||(25170303-25170339)
chr5 (340-382)||(858337-858379)
chr5 (340-382)||(4194642-4194684)
chr5 (340-382)||(5357881-5357923)
chr5 (340-382)||(11099541-11099583)
chr5 (340-382)||(15898193-15898235)
chr5 (340-382)||(35334590-35334632)
chr5 (340-382)||(35646153-35646195)
chr5 (340-378)||(36469158-36469196)
chr5 (340-382)||(39183691-39183733)
chr5 (340-382)||(42575702-42575744)
chr5 (22-63)||(10051294-10051335)
chr5 (340-377)||(13087805-13087842)
chr5 (73-141)||(31933464-31933531)
[»] chr3 (29 HSPs)
chr3 (25-142)||(39439828-39439948)
chr3 (25-136)||(42029258-42029373)
chr3 (25-131)||(27011222-27011331)
chr3 (25-130)||(25045413-25045521)
chr3 (31-130)||(32278405-32278507)
chr3 (73-132)||(40024828-40024887)
chr3 (340-382)||(1334844-1334886)
chr3 (340-382)||(21296566-21296608)
chr3 (340-382)||(32977853-32977895)
chr3 (340-382)||(43639579-43639621)
chr3 (340-382)||(46194269-46194311)
chr3 (340-382)||(50736103-50736145)
chr3 (340-382)||(50776710-50776752)
chr3 (340-388)||(9218141-9218189)
chr3 (16-63)||(2230153-2230200)
chr3 (340-382)||(1923092-1923134)
chr3 (340-382)||(5245414-5245456)
chr3 (340-382)||(21585473-21585515)
chr3 (340-382)||(32023164-32023206)
chr3 (340-382)||(37041936-37041978)
chr3 (340-378)||(39329813-39329851)
chr3 (344-382)||(41607726-41607764)
chr3 (340-382)||(47496171-47496213)
chr3 (344-382)||(48409586-48409624)
chr3 (340-382)||(53051028-53051070)
chr3 (340-382)||(54122287-54122329)
chr3 (341-382)||(47684769-47684810)
chr3 (340-388)||(38600869-38600917)
chr3 (340-388)||(41031568-41031616)
[»] scaffold0110 (1 HSPs)
scaffold0110 (16-131)||(38552-38670)
[»] chr7 (29 HSPs)
chr7 (25-131)||(23417195-23417304)
chr7 (25-130)||(19625458-19625566)
chr7 (25-141)||(12633465-12633587)
chr7 (340-388)||(31581506-31581554)
chr7 (25-130)||(261729-261837)
chr7 (340-378)||(2849261-2849299)
chr7 (336-382)||(23111589-23111635)
chr7 (340-382)||(25778746-25778788)
chr7 (340-382)||(30659543-30659585)
chr7 (340-382)||(37264315-37264357)
chr7 (340-382)||(38181937-38181979)
chr7 (340-382)||(46288494-46288536)
chr7 (341-382)||(9602863-9602904)
chr7 (341-382)||(9830434-9830475)
chr7 (339-388)||(12308374-12308423)
chr7 (340-388)||(23703912-23703960)
chr7 (340-382)||(2846739-2846781)
chr7 (340-382)||(5068361-5068403)
chr7 (340-382)||(7425941-7425983)
chr7 (340-382)||(14648982-14649024)
chr7 (340-382)||(30462662-30462704)
chr7 (340-382)||(30463018-30463060)
chr7 (340-382)||(32775985-32776027)
chr7 (340-382)||(34064217-34064259)
chr7 (340-382)||(37496460-37496502)
chr7 (340-382)||(38589736-38589778)
chr7 (340-382)||(43007896-43007938)
chr7 (340-382)||(44604540-44604582)
chr7 (340-381)||(1643401-1643442)
[»] scaffold0127 (1 HSPs)
scaffold0127 (25-130)||(30118-30226)
[»] chr8 (26 HSPs)
chr8 (340-382)||(33925147-33925189)
chr8 (25-142)||(38679782-38679901)
chr8 (25-145)||(30800223-30800346)
chr8 (340-382)||(11637142-11637184)
chr8 (340-382)||(14117464-14117506)
chr8 (340-388)||(4274362-4274410)
chr8 (25-61)||(34924794-34924830)
chr8 (338-382)||(36012033-36012077)
chr8 (340-376)||(39998171-39998207)
chr8 (347-382)||(31132732-31132767)
chr8 (340-382)||(2195470-2195512)
chr8 (340-382)||(5392051-5392093)
chr8 (340-382)||(7258430-7258472)
chr8 (340-382)||(8418365-8418407)
chr8 (340-382)||(14689962-14690004)
chr8 (340-382)||(14748769-14748811)
chr8 (340-382)||(28791310-28791352)
chr8 (340-382)||(32967340-32967382)
chr8 (340-382)||(33190972-33191014)
chr8 (25-63)||(42025400-42025438)
chr8 (340-382)||(44790485-44790527)
chr8 (341-382)||(3442485-3442526)
chr8 (91-136)||(5358204-5358249)
chr8 (340-385)||(10728985-10729030)
chr8 (340-381)||(42558644-42558685)
chr8 (342-382)||(44975814-44975854)
[»] scaffold0086 (1 HSPs)
scaffold0086 (340-388)||(5814-5862)
[»] scaffold0685 (1 HSPs)
scaffold0685 (340-382)||(6463-6505)
[»] scaffold0227 (1 HSPs)
scaffold0227 (25-63)||(241-279)
[»] scaffold0058 (1 HSPs)
scaffold0058 (340-382)||(14458-14500)
[»] scaffold0039 (1 HSPs)
scaffold0039 (25-142)||(56957-57077)
[»] scaffold0006 (1 HSPs)
scaffold0006 (340-382)||(229825-229867)
[»] chr6 (9 HSPs)
chr6 (340-382)||(33018007-33018049)
chr6 (340-388)||(33109369-33109417)
chr6 (340-382)||(3604663-3604705)
chr6 (340-382)||(6787297-6787339)
chr6 (340-382)||(15371926-15371968)
chr6 (340-382)||(31265781-31265823)
chr6 (340-382)||(34803770-34803812)
chr6 (340-377)||(15351446-15351483)
chr6 (340-376)||(117087-117123)
[»] scaffold0262 (1 HSPs)
scaffold0262 (340-382)||(12499-12541)
[»] scaffold0007 (1 HSPs)
scaffold0007 (340-382)||(230258-230300)
[»] scaffold0001 (1 HSPs)
scaffold0001 (340-382)||(394780-394822)
[»] scaffold0321 (1 HSPs)
scaffold0321 (345-382)||(9617-9654)
[»] scaffold0028 (1 HSPs)
scaffold0028 (340-388)||(26609-26657)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 46944087 - 46944220
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  46944087 gaatggaatggagtgtgatggaactcattccatccaataccactcattttgtcaattttccattccacccaatttggggtgtatccaatggaatgtagca 46944186  T
Q  122 cattaataatataatgacaacattgtcctcctca 155  Q
    ||||||||||||||| ||||||||||||||||||    
T  46944187 cattaataatataattacaacattgtcctcctca 46944220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 22405077 - 22405190
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgg-agc 120  Q
    ||||||||||||||||||||||||||||||||||||||| |   ||||   |||||||||||||||||| ||||||  |||||||||||||||||| | |    
T  22405077 gaatggaatggagtgtgatggaactcattccatccaataccaatcattccttcaattttccattccacccaatttggagtgtatccaatggaatggaacc 22405176  T
Q  121 acattaataatata 134  Q
    ||||||||||||||    
T  22405177 acattaataatata 22405190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 50859210 - 50859327
Alignment:
Q  27 atggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagcaca 123  Q
    ||||||||||||||||||||| ||||||||||||||| |   ||||| | ||| ||  |||||| || |||||| |||||||||||||||||||| ||||    
T  50859210 atggaatggagtgtgatggaattcattccatccaataccacccatttagccaaattgtcattcctcccaatttggggtgtatccaatggaatggaacaca 50859309  T
Q  124 ttaataatataatgacaa 141  Q
    ||||||||| ||| ||||    
T  50859310 ttaataatacaattacaa 50859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 21263671 - 21263556
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatg-gagc 120  Q
    |||||| ||||||||||||||||| |||||||||||||| |   ||||   |||||||||||||||| | |||||| |||||||| |||||||||  | |    
T  21263671 gaatgggatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttggggtgtatcgaatggaatgaaacc 21263572  T
Q  121 acattaataatataat 136  Q
    ||||||||||||||||    
T  21263571 acattaataatataat 21263556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 35033905 - 35033797
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| |||||||||||||||||||||||||| |   ||||    |||||||||||||| || || ||  | |||||||||||||||||| ||    
T  35033905 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaaca 35033806  T
Q  122 cattaataa 130  Q
    |||||||||    
T  35033805 cattaataa 35033797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 44633200 - 44633159
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44633200 atattgaattgaaagtggtgaaagtagtattaattagagtta 44633159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 3121269 - 3121307
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3121269 gaatggaatggagtgtgatggaactcattccatccaata 3121307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 35292086 - 35292206
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||| ||||||||| |||||||   | |||||  | ||| ||| |||| |  | |||||| ||||||||||||||||||||  |    
T  35292086 gaatggaatggagtgtgatgtaactcattcaatccaataccacccattaagccaaattttcatttcctccaatttggggtgtatccaatggaatggaata 35292185  T
Q  122 cattaataatataatgacaac 142  Q
    ||| ||||||| |||||||||    
T  35292186 cataaataatacaatgacaac 35292206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 35998180 - 35998222
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  35998180 tatattgaattgagagtggtgaaagtagtattaattagagtta 35998222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 39052964 - 39053006
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  39052964 tatattgaattgagagtggtgaaagtagtattaattagagtta 39053006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 42185859 - 42185907
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  42185859 tatattgaattgagagtgatgaaagtagtattaattagagttataaatg 42185907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 31227739 - 31227843
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||| |||||||||||| ||||||||||||||| |   |||||   ||||||| |||||| || |||| || |||||||||||||||||||  |    
T  31227739 gaatggaatgaagtgtgatggaaatcattccatccaataccactcatttaaccaatttttcattcccccaaattgga-gtgtatccaatggaatggaata 31227837  T
Q  122 cattaa 127  Q
    ||||||    
T  31227838 cattaa 31227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 41223750 - 41223629
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatcc-aatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagc 120  Q
    |||||||||||||||||||||||| |||||||||| |||| |   ||||| |||| |||| |||||| || || ||| |  ||||||||||||||||| |    
T  41223750 gaatggaatggagtgtgatggaacccattccatccaaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaatggaac 41223651  T
Q  121 acattaataatataatgacaac 142  Q
    ||  |||||||| ||| |||||    
T  41223650 actctaataataaaattacaac 41223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 4292728 - 4292690
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4292728 gaatggaatggtgtgtgatggaactcattccatccaata 4292690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 17237087 - 17237045
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  17237087 tatattgaattgaaagcgatgaaagtagtattaattagagtta 17237045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 25149495 - 25149453
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  25149495 tatattgaattggaagttgtgaaagtagtattaattagagtta 25149453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 29815160 - 29815202
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  29815160 tatattgaattggaagtggtgaaagtaatattaattagagtta 29815202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 38977035 - 38976993
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  38977035 tatattgaattgaaaatgatgaaagtagtattaattagagtta 38976993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 41203781 - 41203739
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  41203781 tatattgaattgaaagtgataaaagtagtattaattagagtta 41203739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 22129136 - 22129176
Alignment:
Q  342 tattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  22129136 tattgaattgtgagtggtgaaagtagtattaattagagtta 22129176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 1796305 - 1796347
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  1796305 tatattgaattggaagttgtgaaagtagtataaattagagtta 1796347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 3686055 - 3686013
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  3686055 tatattgaattgagagtgatgaaagtaatattaattagagtta 3686013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 10099788 - 10099830
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||| |||||||||||||||||||||||||    
T  10099788 tatattgaattgggagttgtgaaagtagtattaattagagtta 10099830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 12619732 - 12619694
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  12619732 tatattgaatttaaagtgatgaaagtagtattaattaga 12619694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 18509885 - 18509843
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||| || ||||||||||| ||||||||||||||||||    
T  18509885 tatattgaagtgtaagtggtgaaaatagtattaattagagtta 18509843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 18849822 - 18849864
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  18849822 tatattgaattggaagttgtgaaagtaatattaattagagtta 18849864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 22020573 - 22020615
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  22020573 tatattgaattgagaatggtgaaagtagtaataattagagtta 22020615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 22872451 - 22872493
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  22872451 tatattgaattgagagtgatgaaagtaatattaattagagtta 22872493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 29550790 - 29550832
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||| |||||||||||||||||||||||||    
T  29550790 tatattgaattgggagttgtgaaagtagtattaattagagtta 29550832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 37309742 - 37309700
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  37309742 tatattgaattgagagtgatgaaagtaatattaattagagtta 37309700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 38319955 - 38319913
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||    
T  38319955 tatattgaattgagagtgatgaaagtagtattaattagtgtta 38319913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 42024264 - 42024306
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||| |||||||||||||||||| |||||    
T  42024264 tatattgaattggaagtgatgaaagtagtattaattatagtta 42024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 42132857 - 42132815
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||||||||||||| |||||||||| ||||    
T  42132857 tatattgaattggaagtggtgaaagtaatattaattagtgtta 42132815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 47787910 - 47787952
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||| ||||||||| || ||||||||||||||||||||||||    
T  47787910 tatatggaattgaaaatgatgaaagtagtattaattagagtta 47787952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 49448885 - 49448843
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  49448885 tatattgaattgagaatgatgaaagtagtattaattagagtta 49448843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 51572291 - 51572333
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  51572291 tatattgaattggaagtgataaaagtagtattaattagagtta 51572333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 55360411 - 55360453
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  55360411 tatattgaattgagagtgatgaaagtaatattaattagagtta 55360453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 20964351 - 20964388
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattag 377  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  20964351 tatatcgaattggaagtggtgaaagtagtattaattag 20964388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 4357612 - 4357564
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||  |||| ||||| |||||||||||||||||| |||||    
T  4357612 tatattgaattgggagtgatgaaaatagtattaattagagttataaatg 4357564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 36047163 - 36047199
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  36047163 tatattgaattgagagtggtgaaagtaatattaatta 36047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 41809928 - 41809872
Alignment:
Q  74 caattttccattccacctaatttgaggtgtatccaatggaatggagcacattaataa 130  Q
    |||||||||||||| || |||||| | ||||| |||||||||||| | |||||||||    
T  41809928 caattttccattccccccaatttgggatgtattcaatggaatggaacgcattaataa 41809872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 49218845 - 49218881
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  49218845 tatattgaattgagagtggtgaaagtaatattaatta 49218881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 44246367 - 44246479
Alignment:
Q  20 aaaatgaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatg 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |   |||| | |||||||| ||||||| | |||||| ||||||||||||||||||    
T  44246367 aaaaggaatggaatggagtgtgatggaactcattccatccaataccactcattctttcaatttttcattccatccaatttggggtgtatccaatggaatg 44246466  T
Q  117 gagcacattaata 129  Q
    || ||||||||||    
T  44246467 gaacacattaata 44246479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 28219059 - 28219174
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgg-agc 120  Q
    |||||||||||||||||||||||| |||||||||||||| |   ||||   |||||||| ||||||||| |||||| ||||||||||||||||||| | |    
T  28219059 gaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaacc 28219158  T
Q  121 acattaataatataat 136  Q
    ||||||||||||||||    
T  28219159 acattaataatataat 28219174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 10354296 - 10354416
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||| |||| |||||||||||||||||   | |||||  | ||| ||| |||||| || || || |||||||||||||||||||||  |    
T  10354296 gaatggaatggagtgcgatgaaactcattccatccaataccacccattaagccaaattttcattccccccaaattaaggtgtatccaatggaatggaata 10354395  T
Q  122 cattaataatataatgacaac 142  Q
    ||| ||||||| |||||||||    
T  10354396 cataaataatacaatgacaac 10354416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 28199302 - 28199194
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||| ||||||| |||||||||||| ||||||||||||| |   ||||   ||||||||||||||| || || ||| |||||||||||||| ||||| ||    
T  28199302 gaatcgaatggaatgtgatggaacttattccatccaataccactcattcattcaattttccattcctcccaaattggggtgtatccaatgggatggaaca 28199203  T
Q  122 cattaataa 130  Q
    |||||||||    
T  28199202 cattaataa 28199194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 4794617 - 4794575
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  4794617 tatattgaattgaaagtgatgaaagtagtattaattagagtta 4794575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 5711037 - 5710998
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagag 379  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5711037 tatattgaattgagagtggtgaaagtagtattaattagag 5710998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 1499310 - 1499214
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgga 118  Q
    |||||||||| |||||||||||| ||||||||||||||| |   ||||    |||||||  ||| | || |||||||||||||||||||||||||||    
T  1499310 gaatggaatgcagtgtgatggaattcattccatccaataccaatcattcaaccaattttttatttcccccaatttgaggtgtatccaatggaatgga 1499214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 3100444 - 3100398
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaa 386  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||    
T  3100444 tatattaaattggaagttgtgaaagtagtattaattagagttacaaa 3100398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 3199942 - 3199900
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  3199942 tatattgaattgggagtggtgaaagtagtattaattagagtta 3199900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 7213519 - 7213477
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  7213519 tatattgaattgagagttgtgaaagtagtattaattagagtta 7213477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 7444765 - 7444727
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  7444765 gaatggaatggagtgtgatggaacccattccatccaata 7444727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 7931559 - 7931601
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  7931559 tatattgaattgagagttgtgaaagtagtattaattagagtta 7931601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 9472466 - 9472424
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  9472466 tatattgaattgatagtggtgaaagtagtattaattatagtta 9472424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 23685003 - 23684961
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  23685003 tatattgaattgagagtgatgaaagtagtattaattagagtta 23684961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28301478 - 28301436
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  28301478 tatattgaattgagagtgatgaaagtagtattaattagagtta 28301436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 5212021 - 5212057
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5212021 tatattgaattgaaagttgtgaaagtagtattaatta 5212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 33751503 - 33751463
Alignment:
Q  342 tattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  33751503 tattgaattgagagtgatgaaagtagtattaattagagtta 33751463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 37529137 - 37529176
Alignment:
Q  343 attgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  37529137 attgaattggaagtggtgaaagtaatattaattagagtta 37529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 44284383 - 44284430
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||| ||||||||||| |||||||| ||||||||||||||| |||||    
T  44284383 atattaaattgaaagtgatgaaagtattattaattagagttataaatg 44284430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 1908557 - 1908599
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  1908557 tatattgaattggaagtggtgaaaataatattaattagagtta 1908599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 6685726 - 6685764
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  6685726 tatattgaattggaagtggtgaaagttgtattaattaga 6685764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 10069648 - 10069690
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  10069648 tatattgaattgagagtgatgaaagtattattaattagagtta 10069690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 13222112 - 13222070
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||||||||||||| |||||||||| ||||    
T  13222112 tatattgaattggaagtggtgaaagtaatattaattagtgtta 13222070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 19515925 - 19515883
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||  ||||||||||||||||||||||||    
T  19515925 tatattgaattgtaagtaatgaaagtagtattaattagagtta 19515883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 28108438 - 28108480
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  28108438 tatattgaattgagaatgatgaaagtagtattaattagagtta 28108480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28572252 - 28572210
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||||||||||||| |||||    
T  28572252 tatattgaattggaagttgtgaaagtagtattaattacagtta 28572210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28844103 - 28844061
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||    
T  28844103 tatattgaattgagagtggtgaaagtattatttattagagtta 28844061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 33880202 - 33880160
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  33880202 tatattgaattgggagtggtgaaagtaatattaattagagtta 33880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 41436123 - 41436081
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  41436123 tatattgaattgagaatgatgaaagtagtattaattagagtta 41436081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 43077789 - 43077831
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  43077789 tatattgaattgaaaatgatgaaagtaatattaattagagtta 43077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 43182318 - 43182276
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||||||||| |||||||||||| |||||    
T  43182318 tatattgaattggaagtggtgaaaatagtattaattaaagtta 43182276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 44424326 - 44424368
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  44424326 tatattgaattgagaatgatgaaagtagtattaattagagtta 44424368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 4283082 - 4283123
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtt 381  Q
    ||||||||||||| |||||| |||||||||| ||||||||||    
T  4283082 tatattgaattgagagtggtaaaagtagtataaattagagtt 4283123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 6479307 - 6479356
Alignment:
Q  100 gtgtatccaatggaatggagcacattaataatataatgacaacattgtcc 149  Q
    ||||||||||||||||||| || | |||||||| ||| ||||||||||||    
T  6479307 gtgtatccaatggaatggaacatactaataatacaattacaacattgtcc 6479356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 3487438 - 3487398
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagt 380  Q
    ||||||||||||| |||| |||||||| |||||||||||||    
T  3487438 tatattgaattgagagtgatgaaagtaatattaattagagt 3487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 12511 - 12397
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   ||||   |||||||||||||||| | ||||||||||||||||||| ||||||| ||    
T  12511 gaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaaca 12412  T
Q  122 cattaataatataat 136  Q
    ||| |||||||||||    
T  12411 catcaataatataat 12397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 42934260 - 42934374
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   ||||   |||||||||||||||| | ||||||||||||||||||| ||||||| ||    
T  42934260 gaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaaca 42934359  T
Q  122 cattaataatataat 136  Q
    ||| |||||||||||    
T  42934360 catcaataatataat 42934374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 42365923 - 42366032
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   |||| |  ||||||| ||||||| |||||||| |||||||||||||||||||| ||    
T  42365923 gaatggaatggagtgtgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatggaaca 42366022  T
Q  122 cattaataat 131  Q
    ||||||||||    
T  42366023 cattaataat 42366032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 48046439 - 48046559
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||||||||||||||||||||||||||   | |||||  | ||| ||| |||||| ||||||||| ||||||||||||||||||||  |    
T  48046439 gaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccctaatttggggtgtatccaatggaatggaata 48046538  T
Q  122 cattaataatataatgacaac 142  Q
    ||| ||||||| |||||||||    
T  48046539 cataaataatacaatgacaac 48046559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 15581607 - 15581713
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||   ||||||| |  |||||||||||||| || |||||| |||||||||||||||||||| ||    
T  15581607 gaatggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttccattccccccaatttggggtgtatccaatggaatggaaca 15581706  T
Q  122 cattaat 128  Q
    || ||||    
T  15581707 caataat 15581713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 39793621 - 39793746
Alignment:
Q  28 tggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagcacat 124  Q
    ||||||| ||||| |||||| |||||||||||||||     ||||| ||||||||| ||||||  |||||||  ||||||||||||| |||||| |||||    
T  39793621 tggaatgaagtgtaatggaagtcattccatccaataaaactcatttagtcaatttttcattccttctaatttagggtgtatccaatgaaatggaacacat 39793720  T
Q  125 taataatataatgacaacattgtcct 150  Q
    |||||||| ||| |||||||||||||    
T  39793721 taataatacaattacaacattgtcct 39793746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 34969807 - 34969935
Alignment:
Q  16 gtaaaaaatgaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatgg 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |   ||||  ||||| ||| |||||| || |||||| |||||||| |||||    
T  34969807 gtaaaaaatgaatggaatgaagtgtgatggaacccattccatccaataccactcattaagtcaaattttcattcctcc-aatttggggtgtatcaaatgg 34969905  T
Q  113 aatggagcacattaataatataatgacaac 142  Q
    ||| ||  |||||||||||| || ||||||    
T  34969906 aatagaatacattaataatacaaagacaac 34969935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 41404109 - 41404217
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| ||||||||||| |||||||||  ||| |   ||||    |||||||||||||| || |||||| ||||||||||||| |||||| ||    
T  41404109 gaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaaca 41404208  T
Q  122 cattaataa 130  Q
    |||||||||    
T  41404209 cattaataa 41404217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 16302795 - 16302758
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat 62  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16302795 gaatggaatggagtgtgatggaactcattccatccaat 16302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 2886215 - 2886173
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  2886215 tatattgaattgagagtggtgaaagtagtattaattagtgtta 2886173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 4466218 - 4466260
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  4466218 tatattgtattggaagtggtgaaagtagtattaattagagtta 4466260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 8327761 - 8327719
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  8327761 tatattgaattgagagtgatgaaagtagtattaattagagtta 8327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 26756020 - 26755978
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  26756020 tatattgaattgaaaatgatgaaagtagtattaattagagtta 26755978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 36232853 - 36232895
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  36232853 tatattgaattggaaatggtgaaagtagtattaattagagtta 36232895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 50333979 - 50333937
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  50333979 tatattgaattgagagtggtgaaagtattattaattagagtta 50333937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 52382450 - 52382492
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  52382450 tatattgaattgagagtggtgaaagtaatattaattagagtta 52382492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 50678170 - 50678131
Alignment:
Q  92 aatttgaggtgtatccaatggaatggagcacattaataat 131  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  50678170 aatttggggtgtatccaatggaatggaacacattaataat 50678131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 705413 - 705455
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||| |||||| |||||||||||||||    
T  705413 tatattgaattgagagtggtaaaagtaatattaattagagtta 705455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 2219512 - 2219554
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||| |||||||||||||||||||    
T  2219512 tatattgaattggaagttgtgaacgtagtattaattagagtta 2219554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 2571407 - 2571365
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  2571407 tatattgaattgagagtgatgaaagtagtattaactagagtta 2571365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 3718913 - 3718955
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||| |||||||||||||||||||    
T  3718913 tatattgaattgagagtgatgaaggtagtattaattagagtta 3718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 10587645 - 10587687
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||    
T  10587645 tatattgaattgagagtgatgaaagtagtattaattagtgtta 10587687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 16451675 - 16451633
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||    
T  16451675 tatattgaattgagagttgtgaaagtagtattaattaaagtta 16451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 16460828 - 16460786
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||    
T  16460828 tatattgaattgagagttgtgaaagtagtattaattaaagtta 16460786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 17342872 - 17342830
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  17342872 tatattgaattgagagtgataaaagtagtattaattagagtta 17342830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 18186270 - 18186312
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  18186270 tatactgaattgggagtggtgaaagtagtattaattagagtta 18186312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 24131464 - 24131506
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  24131464 tatattgaattgggagtggtgaaagtagtattaattagtgtta 24131506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 27210031 - 27210073
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||  |||||||||||||||||    
T  27210031 tatattgaattgagagtggtgaaaagagtattaattagagtta 27210073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 28277102 - 28277144
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  28277102 tatattgaattgaaaatgatgaaagtggtattaattagagtta 28277144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28908137 - 28908095
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||    
T  28908137 tatattgaattgatagtgatgaaagtagtatttattagagtta 28908095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 29225797 - 29225755
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  29225797 tatattgaattgggagtgatgaaagtagtattaattagagtta 29225755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 29756206 - 29756248
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  29756206 tatattgaattgggagtggtgaaagtagtattaattagtgtta 29756248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 33149317 - 33149275
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||    
T  33149317 tatattgaattgagagtgatgaaagtagtattaattagtgtta 33149275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 37925310 - 37925352
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  37925310 tatattgaattgagagtggtgaaagtaatattaattagtgtta 37925352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 50678223 - 50678185
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  50678223 gaatggaatggagtgtgatggaacccattctatccaata 50678185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 29225472 - 29225504
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtatta 372  Q
    |||||||||||| ||||||||||||||||||||    
T  29225472 tatattgaattggaagtggtgaaagtagtatta 29225504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 46363475 - 46363511
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  46363475 tatattgaattgagagtggtggaagtagtattaatta 46363511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 49764940 - 49764976
Alignment:
Q  27 atggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||| |||||||||||||| |||||||||    
T  49764940 atggaatggagtatgatggaactcatttcatccaata 49764976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 52146725 - 52146761
Alignment:
Q  346 gaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  52146725 gaattgagagttgtgaaagtagtattaattagagtta 52146761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 44207 - 44080
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   |||||   |||||||||||||| || ||||||||||||  ||||||||||| | ||    
T  44207 gaatggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaaca 44108  T
Q  122 cattaataatataatgacaacattgtcc 149  Q
    ||||||||| | ||| ||||||||||||    
T  44107 cattaataagacaattacaacattgtcc 44080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 77928 - 77801
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   |||||   |||||||||||||| || ||||||||||||  ||||||||||| | ||    
T  77928 gaatggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaaca 77829  T
Q  122 cattaataatataatgacaacattgtcc 149  Q
    ||||||||| | ||| ||||||||||||    
T  77828 cattaataagacaattacaacattgtcc 77801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 4943568 - 4943683
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgg-agc 120  Q
    |||||||||||||||||||||||| |||||||||||||| |   ||||   |||||||||||||||||| |||||| ||||| ||||||||||||| | |    
T  4943568 gaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccacccaatttggggtgtttccaatggaatggaacc 4943667  T
Q  121 acattaataatataat 136  Q
    ||||||||||||||||    
T  4943668 acattaataatataat 4943683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 30084941 - 30085049
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| |||||||||||||||||||||||||| |   ||||    |||||||||||||| || || ||| |||||||||||||||||||| ||    
T  30084941 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaatggaaca 30085040  T
Q  122 cattaataa 130  Q
    |||||||||    
T  30085041 cattaataa 30085049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 11617275 - 11617395
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||||||||||||||||||||||||||   | |||||  | ||| ||| |||||| || || ||   |||||||||||||||||||  |    
T  11617275 gaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccccaaattagtgtgtatccaatggaatggaata 11617374  T
Q  122 cattaataatataatgacaac 142  Q
    ||| ||||||| |||||||||    
T  11617375 cataaataatacaatgacaac 11617395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 9159479 - 9159587
Alignment:
Q  29 ggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgt--atccaatggaatggagcaca 123  Q
    |||||||| ||||||||||| |||||||||||||| |   |||||   |||| ||||||||| |||||||||||||||  ||||||| ||||||| ||||    
T  9159479 ggaatggaatgtgatggaacccattccatccaataccacccatttatccaatcttccattccccctaatttgaggtgtgcatccaatagaatggaacaca 9159578  T
Q  124 ttaataata 132  Q
    || ||||||    
T  9159579 ttgataata 9159587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 8369760 - 8369802
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  8369760 tatattgaattgaaagttgtgaaagtagtattaattagagtta 8369802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 19889597 - 19889639
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  19889597 tatattgaattgaaagtggtgaaagtaatattaattagagtta 19889639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 5247929 - 5247871
Alignment:
Q  74 caattttccattccacctaatttgaggtgtatccaatggaatggagcacattaataata 132  Q
    ||||||||||||||| | ||||| ||||||| ||||| ||||||| |||||||||||||    
T  5247929 caattttccattccatccaatttaaggtgtacccaatagaatggaacacattaataata 5247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 15254809 - 15254767
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  15254809 tatattgaattgaaagtgatgaaagtaatattaattagagtta 15254767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 17243018 - 17243060
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  17243018 tatattgaattgagagtgatgaaagtagtattaattagagtta 17243060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 36446751 - 36446789
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36446751 tatattgaattgaaagtgatgaaagtagtattaattaga 36446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 43525518 - 43525480
Alignment:
Q  344 ttgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  43525518 ttgaattggaagtggtgaaagtagtattaattagagtta 43525480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 22582936 - 22582977
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  22582936 atattgaattggaagttgtgaaagtagtattaattagagtta 22582977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 25108617 - 25108581
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25108617 tatattgaattggaagtggtgaaagtagtattaatta 25108581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 25111212 - 25111248
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25111212 tatattgaattggaagtggtgaaagtagtattaatta 25111248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 25167709 - 25167673
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25167709 tatattgaattggaagtggtgaaagtagtattaatta 25167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 25170303 - 25170339
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25170303 tatattgaattggaagtggtgaaagtagtattaatta 25170339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 858379 - 858337
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||| |||||| |||| ||||||||||||||||||||||||    
T  858379 tatatttaattgagagtgatgaaagtagtattaattagagtta 858337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 4194684 - 4194642
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  4194684 tatattgaattgggagtggtgaaagtagtattaattagtgtta 4194642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 5357881 - 5357923
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  5357881 tatattgtattggaagtggtgaaagtaatattaattagagtta 5357923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 11099541 - 11099583
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  11099541 tatattgaattgggagtgatgaaagtagtattaattagagtta 11099583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 15898235 - 15898193
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  15898235 tatattgaattgagagtggtgaaagtaatattaattagtgtta 15898193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 35334590 - 35334632
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  35334590 tatattgaattgggagtgatgaaagtagtattaattagagtta 35334632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 35646153 - 35646195
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||  |||| |||||||||||||||||||||||||    
T  35646153 tatattgaattagaagttgtgaaagtagtattaattagagtta 35646195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 36469158 - 36469196
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  36469158 tatattgaattaaaagtgatgaaagtagtattaattaga 36469196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 39183691 - 39183733
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  39183691 tatattgaattgagagtgatgaaagtaatattaattagagtta 39183733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 42575702 - 42575744
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||||||||||||| |||||    
T  42575702 tatattgaattggaagttgtgaaagtagtattaattaaagtta 42575744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 10051335 - 10051294
Alignment:
Q  22 aatgaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||| ||||||||||||||||||||||||  |||||||    
T  10051335 aatgaatgaaatggagtgtgatggaactcattcagtccaata 10051294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 13087805 - 13087842
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattag 377  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  13087805 tatattgaattgagagtggtgaaagtaatattaattag 13087842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 31933531 - 31933464
Alignment:
Q  73 tcaattttccattccacctaatttgaggtgtatccaatggaatggagcacattaataatataatgacaa 141  Q
    |||||||| |||||| ||||||  ||||||||| |||||||||| | ||||||||||||| ||| ||||    
T  31933531 tcaatttttcattcc-cctaatcagaggtgtattcaatggaatgaaacacattaataatacaattacaa 31933464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 39439948 - 39439828
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaat---atccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||||||||||||||||||||||||||   | |||||    ||| ||| |||||| || |||||| ||||||||||||||||||||  |    
T  39439948 gaatggaatggagtgtgatggaactcattccatccaataccacccattaaaccaaattttcattccccccaatttggggtgtatccaatggaatggaata 39439849  T
Q  122 cattaataatataatgacaac 142  Q
    ||| |||||||||||||||||    
T  39439848 cataaataatataatgacaac 39439828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 42029373 - 42029258
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgg-agc 120  Q
    |||||||||||||| ||||||||| |||||||||||||| |   ||||   |||||||| ||||||||| |||||| ||||||||||||||||||| | |    
T  42029373 gaatggaatggagtatgatggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaacc 42029274  T
Q  121 acattaataatataat 136  Q
    ||||||||||||||||    
T  42029273 acattaataatataat 42029258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 27011222 - 27011331
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||||||||||||||| |||||||||||||| |   |||| |  ||||||| ||||||| | |||||| |||||||||||||||||| | ||    
T  27011222 gaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatgaaaca 27011321  T
Q  122 cattaataat 131  Q
    ||||||||||    
T  27011322 cattaataat 27011331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 25045413 - 25045521
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| |||||||||||||||||||||||||| |   ||||    |||||||||||||| || || |||  ||||||||||||||||||| ||    
T  25045413 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggtgtgtatccaatggaatggaaca 25045512  T
Q  122 cattaataa 130  Q
    |||||||||    
T  25045513 cattaataa 25045521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 32278405 - 32278507
Alignment:
Q  31 aatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagcacattaa 127  Q
    |||||| |||||||||||||||||||||||||| |   ||||    |||||||||||||| || || ||| ||||||||||||||||| || ||||||||    
T  32278405 aatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaattgaacacattaa 32278504  T
Q  128 taa 130  Q
    |||    
T  32278505 taa 32278507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 40024887 - 40024828
Alignment:
Q  73 tcaattttccattccacctaatttgaggtgtatccaatggaatggagcacattaataata 132  Q
    |||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||    
T  40024887 tcaatttttcattcctcccaatttggggtgtatccaatggaatggaacacattaataata 40024828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 1334844 - 1334886
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  1334844 tatattgaattgggagtggtgaaagtagtattaattagagtta 1334886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 21296566 - 21296608
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  21296566 tatattgaattggaagttgtgaaagtagtattaattagagtta 21296608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 32977853 - 32977895
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  32977853 tatattgaattgagagttgtgaaagtagtattaattagagtta 32977895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 43639579 - 43639621
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  43639579 tatattgaattggaagttgtgaaagtagtattaattagagtta 43639621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 46194269 - 46194311
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  46194269 tatattgaattgagagtggtgaaagtagtattaattagtgtta 46194311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 50736145 - 50736103
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  50736145 tatattgaattggaagtagtgaaagtagtattaattagagtta 50736103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 50776710 - 50776752
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  50776710 tatattgaattggaagtagtgaaagtagtattaattagagtta 50776752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 9218189 - 9218141
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    |||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  9218189 tataatgaattgagagtgatgaaagtagtattaattagagttataaatg 9218141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 2230200 - 2230153
Alignment:
Q  16 gtaaaaaatgaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||    
T  2230200 gtaaaaaatgaatgaaatggaatgtgatggaacccattgcatccaata 2230153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 1923134 - 1923092
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  1923134 tatattgaattgggagtggtgaaagtagtattaattagtgtta 1923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 5245456 - 5245414
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||    
T  5245456 tatattgaattgagagtgatgaaagtggtattaattagagtta 5245414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 21585473 - 21585515
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  21585473 tatattgtattggaagtggtgaaagtaatattaattagagtta 21585515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 32023164 - 32023206
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  32023164 tatattgaattgagagtgatgaaagtaatattaattagagtta 32023206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 37041936 - 37041978
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| || || ||||||||||||||||||||||||    
T  37041936 tatattgaattggaaatgatgaaagtagtattaattagagtta 37041978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 39329813 - 39329851
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  39329813 tatattgaattgagagtgatgaaagtagtattaattaga 39329851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 41607726 - 41607764
Alignment:
Q  344 ttgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  41607726 ttgaattgaaagtgttgaaagtagtattaattaaagtta 41607764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 47496213 - 47496171
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  47496213 tatattgaattaagagtgatgaaagtagtattaattagagtta 47496171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 48409624 - 48409586
Alignment:
Q  344 ttgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  48409624 ttgaattgggagtggtgaaagtagtattaattagagtta 48409586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 53051070 - 53051028
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||| |||||||||||||||||||||||||    
T  53051070 tatattgaattgggagttgtgaaagtagtattaattagagtta 53051028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 54122287 - 54122329
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||| ||||||||||    
T  54122287 tatattgaattggaagttgtgaaagtagtattgattagagtta 54122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 47684810 - 47684769
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||  |||| ||||||||||||||||||||||||    
T  47684810 atattgaattgggagtgatgaaagtagtattaattagagtta 47684769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 38600869 - 38600917
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||| ||  |||| |||||||||||||||||||||||| |||||    
T  38600869 tatattgaactgggagtgatgaaagtagtattaattagagttataaatg 38600917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 41031616 - 41031568
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    |||||||||||| || || |||||||||||||||||| ||||| |||||    
T  41031616 tatattgaattggaaatgatgaaagtagtattaattaaagttataaatg 41031568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 38670 - 38552
Alignment:
Q  16 gtaaaaaatgaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatgg 112  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| |   |||| |  ||||||| |||||||   |||||| | ||||||||||||    
T  38670 gtaaaaaaggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccattcaatttgggatgtatccaatgg 38571  T
Q  113 aatggagcacattaataat 131  Q
    |||||| ||||||||||||    
T  38570 aatggaacacattaataat 38552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 23417304 - 23417195
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||| ||||||| ||||||||| |||||||||||||| |   |||| |  ||||||| ||||||| | |||||| |||||||||||||||||||| ||    
T  23417304 gaatggcatggagtatgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatggaaca 23417205  T
Q  122 cattaataat 131  Q
    ||||||||||    
T  23417204 cattaataat 23417195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 19625458 - 19625566
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| |||||||||||| ||||||||||||| |   ||||    |||||||||||||| || || ||| |||||||||||||| ||||| ||    
T  19625458 gaatggaatggaatgtgatggaactaattccatccaataccactcattcatccaattttccattcctcccaaattgtggtgtatccaatgggatggaaca 19625557  T
Q  122 cattaataa 130  Q
    |||||||||    
T  19625558 cattaataa 19625566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 12633465 - 12633587
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccat---ccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatgga 118  Q
    ||||||| |||||||||||||||||||||||||   |||||| |   ||||| | |||||||||||||| || || ||  |||||||||||||||||| |    
T  12633465 gaatggagtggagtgtgatggaactcattccatcgaccaataccactcatttagccaattttccattcctcccaaattagggtgtatccaatggaatgaa 12633564  T
Q  119 gcacattaataatataatgacaa 141  Q
      |||||||||||| ||| ||||    
T  12633565 atacattaataatacaattacaa 12633587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 31581506 - 31581554
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||||    
T  31581506 tatattgaattgaaaatgatgaaagtagtattaattagagttataaatg 31581554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 261837 - 261729
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||  ||||||||||  ||||||||| ||||     |||||  ||||||||||||||| |  |||||| ||||||||||||| |||||| ||    
T  261837 gaatggaatgggatgtgatggaatccattccatcaaatacaactcatttactcaattttccattcccctcaatttggggtgtatccaatgaaatggaaca 261738  T
Q  122 cattaataa 130  Q
    |||||||||    
T  261737 cattaataa 261729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 2849299 - 2849261
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattaga 378  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  2849299 tatattgaattgagagtggtgaaagtagtattaattaga 2849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 23111589 - 23111635
Alignment:
Q  336 tttttatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||||    
T  23111589 tttttatattgaattgagactggtgaaagtagtattaattagtgtta 23111635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 25778788 - 25778746
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  25778788 tatattgaattggaagtgatgaaagtagtattaattagagtta 25778746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 30659543 - 30659585
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  30659543 tatattgaatttgaagtggtgaaagtagtattaattagagtta 30659585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 37264357 - 37264315
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  37264357 tatattgaattgggagtggtgaaagtagtattaattagagtta 37264315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 38181937 - 38181979
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  38181937 tatattgaattggaagttgtgaaagtagtattaattagagtta 38181979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 46288494 - 46288536
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  46288494 tatattgaattgaaagttatgaaagtagtattaattagagtta 46288536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 9602904 - 9602863
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  9602904 atattgaattgagagtggtgaaagtagtattaattagtgtta 9602863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 9830475 - 9830434
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  9830475 atattgaattgagagtggtgaaagtagtattaattagtgtta 9830434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 12308423 - 12308374
Alignment:
Q  339 ttatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  12308423 ttatattgaattggaagttgtgaaagtaatattaattagagttataaatg 12308374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 23703960 - 23703912
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||||| || | |||||||||||||||||||||| |||||    
T  23703960 tatattgaattgaaaatgataaaagtagtattaattagagttataaatg 23703912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 2846739 - 2846781
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| || || ||||||||||||||||||||||||    
T  2846739 tatattgaattggaattgatgaaagtagtattaattagagtta 2846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 5068361 - 5068403
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||| | ||||||||||||| |||||||||||||||    
T  5068361 tatattgaattaagagtggtgaaagtaatattaattagagtta 5068403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 7425941 - 7425983
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  7425941 tatattgaattggaagttgtgaaagtagtattaactagagtta 7425983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 14648982 - 14649024
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  14648982 tatattgaattgagagtgatgaaagtaatattaattagagtta 14649024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 30462704 - 30462662
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||    
T  30462704 tatattgaattgagagtgatgaaattagtattaattagagtta 30462662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 30463060 - 30463018
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  30463060 tatattgaattgaaaatgatgaaagtaatattaattagagtta 30463018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 32776027 - 32775985
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||||||||||||||||||| |||||||||    
T  32776027 tatattgaattgggagtggtgaaagtagtattatttagagtta 32775985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 34064259 - 34064217
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  34064259 tatattgaattgagagtgatgaaagtaatattaattagagtta 34064217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 37496460 - 37496502
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||| |||||||||||||||||| |||||    
T  37496460 tatattgaattgagagtgatgaaagtagtattaattaaagtta 37496502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 38589778 - 38589736
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  38589778 tatattgaattgggagtggtgaaagtagtattaattagtgtta 38589736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 43007938 - 43007896
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| |||||||||| || |||||||||||||||    
T  43007938 tatattgaattgagagtggtgaaaataatattaattagagtta 43007896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 44604540 - 44604582
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||| |||| |||| ||||||||||||||||||||||||    
T  44604540 tatattgagttgagagtgatgaaagtagtattaattagagtta 44604582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 1643401 - 1643442
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtt 381  Q
    |||||| |||||||||| | ||||||||||||||||||||||    
T  1643401 tatattaaattgaaagttgggaaagtagtattaattagagtt 1643442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 30226 - 30118
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    |||||||||||| ||||||||||| |||||||||  ||| |   ||||    |||||||||||||| || |||||| ||||||||||||| |||||| ||    
T  30226 gaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaaca 30127  T
Q  122 cattaataa 130  Q
    |||||||||    
T  30126 cattaataa 30118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 33925147 - 33925189
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  33925147 tatattgaattgaaagttgtgaaagtagtattaattagagtta 33925189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 38679782 - 38679901
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaa---tatccattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||||||||||||||||||||||||||| |||   ||  ||||  | ||| ||| |||||| || |||||| |||||||||||| |||||||  |    
T  38679782 gaatggaatggagtgtgatggaactcattccattcaatactactcattaagccaaattttcattcc-ccaaatttggggtgtatccaattgaatggaata 38679880  T
Q  122 cattaataatataatgacaac 142  Q
    |||||||| || |||||||||    
T  38679881 cattaatagtacaatgacaac 38679901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 30800223 - 30800346
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatccattttgtcaa----ttttccattccacctaatttgaggtgtatccaatggaatggagc 120  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||   | ||    ||||||||||  ||||||| | ||||||| |||| |||| || |    
T  30800223 gaatgaaatagagtgtgatggaactcattccatccaata-ccattcatttaaatttttttccattcttcctaattcggggtgtattcaatagaatagaac 30800321  T
Q  121 acattaataatataatgacaacatt 145  Q
    |||||||||||||||| | ||||||    
T  30800322 acattaataatataattagaacatt 30800346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 11637184 - 11637142
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  11637184 tatattgaattgagagtggtgaaagtagtattaattatagtta 11637142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 14117506 - 14117464
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  14117506 tatattgaattgaaagttgtgaaagtaatattaattagagtta 14117464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 4274362 - 4274410
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||| |||||||||| || ||||||||||||||| |||||    
T  4274362 tatattgaattgagagtggtgaaaataatattaattagagttataaatg 4274410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 34924830 - 34924794
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaa 61  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34924830 gaatggaatggagtgtgatggaacccattccatccaa 34924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 36012033 - 36012077
Alignment:
Q  338 tttatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||  || ||||||||||||||||||||||||||    
T  36012033 tttatattgaattgtgagcggtgaaagtagtattaattagagtta 36012077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 39998207 - 39998171
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39998207 tatattgaattgagagtggtgaaagtagtattaatta 39998171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 382
Target Start/End: Complemental strand, 31132767 - 31132732
Alignment:
Q  347 aattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||| |||||||||||||||||||||||||    
T  31132767 aattgaaagttgtgaaagtagtattaattagagtta 31132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 2195512 - 2195470
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  2195512 tatattgaattgggagtgatgaaagtagtattaattagagtta 2195470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 5392093 - 5392051
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  5392093 tatattgaattgggagtgttgaaagtagtattaattagagtta 5392051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 7258430 - 7258472
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  7258430 tatattgaattgggagtgatgaaagtagtattaattagagtta 7258472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 8418365 - 8418407
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||| |||||||| |||| ||||||||||||||||||||||||    
T  8418365 tatactgaattgagagtgatgaaagtagtattaattagagtta 8418407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 14690004 - 14689962
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  14690004 tatattgaattgggagtggtgaaagtagtattaattagtgtta 14689962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 14748769 - 14748811
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | |||||||||||||||||||||| ||||    
T  14748769 tatattgaattgagaatggtgaaagtagtattaattagtgtta 14748811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28791352 - 28791310
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  ||| |||||||||||||||||||||||||    
T  28791352 tatattgaattgggagttgtgaaagtagtattaattagagtta 28791310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 32967340 - 32967382
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  32967340 tatattgaattgagaatgatgaaagtagtattaattagagtta 32967382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 33190972 - 33191014
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||| ||||||||||||    
T  33190972 tatattgaattggaagttgtgaaagtagtactaattagagtta 33191014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 42025438 - 42025400
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  42025438 gaattgaatggagtgtgatggaacccattccatccaata 42025400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 44790485 - 44790527
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  | |||||||||||||||||||||||||||    
T  44790485 tatattgaattgggaatggtgaaagtagtattaattagagtta 44790527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 3442526 - 3442485
Alignment:
Q  341 atattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  3442526 atattgaattgaaaatgatgaaaatagtattaattagagtta 3442485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5358249 - 5358204
Alignment:
Q  91 taatttgaggtgtatccaatggaatggagcacattaataatataat 136  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||||||    
T  5358249 taatttgaggtgtatgcaatggaatggaatacaataataatataat 5358204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 10728985 - 10729030
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaa 385  Q
    ||||||||||||  |||| | |||||||||||||||||||||||||    
T  10728985 tatattgaattgggagtgattaaagtagtattaattagagttacaa 10729030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 42558644 - 42558685
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtt 381  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  42558644 tatattgaattaagagtgatgaaagtagtattaattagagtt 42558685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 44975814 - 44975854
Alignment:
Q  342 tattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  44975814 tattgaattgagcgtgatgaaagtagtattaattagagtta 44975854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 5862 - 5814
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  5862 tatattgaattgagagtggtgaaagtagtattaattaaagttataaatg 5814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 6463 - 6505
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  6463 tatattgaattgagagtggtgaaagtaatattaattagagtta 6505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 279 - 241
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaata 63  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  279 gaatggaatggagtgtgatggaacccattccatccaata 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 14500 - 14458
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  14500 tatattgaattgaaaatgatgaaagtagtattaattagagtta 14458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 56957 - 57077
Alignment:
Q  25 gaatggaatggagtgtgatggaactcattccatccaatatc---cattttgtcaattttccattccacctaatttgaggtgtatccaatggaatggagca 121  Q
    ||||||||| ||||||||||||||  ||||||||||||| |   ||||| |||| |||| |||||| || || ||| |  ||||||||||||||||| ||    
T  56957 gaatggaatagagtgtgatggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaatggaaca 57056  T
Q  122 cattaataatataatgacaac 142  Q
    |  |||||||| ||| |||||    
T  57057 ctctaataataaaattacaac 57077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 229867 - 229825
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  229867 tatattgaattggaagttgtgaaagtagtattaattagagtta 229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 33018007 - 33018049
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  33018007 tatattgaattgggagtggtgaaagtagtattaattagagtta 33018049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 33109417 - 33109369
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||| | || |||||||||||||||||||||||| |||||    
T  33109417 tatattgaattgagaatgatgaaagtagtattaattagagttataaatg 33109369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 3604663 - 3604705
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  3604663 tatattgaattggaagttgtgaaagtaatattaattagagtta 3604705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 6787339 - 6787297
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||| ||||||||||| |||||||||| |||||||||||||    
T  6787339 tatatttaattgaaagtgatgaaagtagttttaattagagtta 6787297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 15371926 - 15371968
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  15371926 tatattgaattgggagtggtgaaagtagtattaattagtgtta 15371968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 31265823 - 31265781
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  31265823 tatattgaattggaagttgtgaaagtaatattaattagagtta 31265781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 34803770 - 34803812
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||    
T  34803770 tatattgaattgagagttgtgaaagtagtattaattatagtta 34803812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 15351446 - 15351483
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattag 377  Q
    ||||||||||||| || |||||||||||||||||||||    
T  15351446 tatattgaattgagagcggtgaaagtagtattaattag 15351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 117123 - 117087
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaatta 376  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  117123 tatattgaattgagagtgatgaaagtagtattaatta 117087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 12499 - 12541
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    ||||||||||| | | |||||||||||||||||||||||||||    
T  12499 tatattgaattaagaatggtgaaagtagtattaattagagtta 12541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 230300 - 230258
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  230300 tatattgaattggaagttgtgaaagtaatattaattagagtta 230258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 394822 - 394780
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||| |||||||| |||| ||||||||||||||||||||||||    
T  394822 tatagtgaattgagagtgatgaaagtagtattaattagagtta 394780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 9617 - 9654
Alignment:
Q  345 tgaattgaaagtggtgaaagtagtattaattagagtta 382  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  9617 tgaattgagagtgatgaaagtagtattaattagagtta 9654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 26657 - 26609
Alignment:
Q  340 tatattgaattgaaagtggtgaaagtagtattaattagagttacaaatg 388  Q
    ||||||||||||  |||| |||||||||||||||||||| ||| |||||    
T  26657 tatattgaattgcgagtgatgaaagtagtattaattagaattataaatg 26609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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