View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_11 (Length: 428)
Name: NF4030_low_11
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 24 - 416
Target Start/End: Complemental strand, 22207190 - 22206796
Alignment:
| Q |
24 |
tgataagttatgactggctacaagtaatttaaattatttgaggttttaaaatgcaaaatcaattaataaattattgaagtcaatttctttaacatttatt |
123 |
Q |
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| T |
22207190 |
tgataagttatgactggctacaagtaatttaaattatttgaggttttaaaatgcaaaatcaattaataaattattgaagtcaatttctttaacatttatt |
22207091 |
T |
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| Q |
124 |
tttcaatggataataaaaaaatcattgcattttttgttgagactgaatatctttggataagnnnnnnnnnnnnnnnn--gagggaaagaagcttatagca |
221 |
Q |
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| T |
22207090 |
tttcaatcgataataaaaaaatcattgaattttttgttgagactgaatatctttggataagttttttttttttttttttgagggaaagaagcttatagca |
22206991 |
T |
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| Q |
222 |
tttcattaataaataatggagttagatgaaaatgtggctacccctgctaacgcgtgaacaatctcatttgtttctttccgactaaactcaacaagcatga |
321 |
Q |
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| T |
22206990 |
tttcattaataaataatggagttggatgaaaatgtggctacccctgctaacgcgtgaacaatctcatttgtttctttccgactaaactcaacaagcatga |
22206891 |
T |
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| Q |
322 |
gagacatcaatatttcttggataagattttcttaattttaggtttttgttaagtaattttttgatgaaattaaattattcccttgatggcctctg |
416 |
Q |
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| T |
22206890 |
gagacatcaatatttcttggataagattttcttaattttaggtttttgttaagtaattttttgatgaaattaaattattcccttgatggcctctg |
22206796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 41344373 - 41344345
Alignment:
| Q |
205 |
gaaagaagcttatagcatttcattaataa |
233 |
Q |
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| T |
41344373 |
gaaagaagcttatagcatttcattaataa |
41344345 |
T |
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