View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_12 (Length: 412)

Name: NF4030_low_12
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_12
NF4030_low_12
[»] chr3 (26 HSPs)
chr3 (14-396)||(22207430-22207812)
chr3 (107-297)||(22459217-22459407)
chr3 (107-297)||(22482198-22482388)
chr3 (110-288)||(22443500-22443681)
chr3 (71-339)||(22437356-22437627)
chr3 (110-178)||(22431909-22431977)
chr3 (214-330)||(22368765-22368881)
chr3 (71-159)||(22358727-22358815)
chr3 (214-297)||(22631325-22631408)
chr3 (214-297)||(22636362-22636445)
chr3 (110-159)||(22368670-22368719)
chr3 (214-263)||(22468804-22468853)
chr3 (110-159)||(22632626-22632675)
chr3 (110-159)||(22636267-22636316)
chr3 (71-159)||(22631191-22631279)
chr3 (60-159)||(21936812-21936911)
chr3 (61-148)||(22104393-22104480)
chr3 (231-330)||(22354247-22354346)
chr3 (113-159)||(2748683-2748729)
chr3 (113-159)||(2768754-2768800)
chr3 (113-159)||(2839007-2839053)
chr3 (113-159)||(2856217-2856263)
chr3 (118-159)||(3221871-3221912)
chr3 (110-158)||(22370911-22370959)
chr3 (71-159)||(22468670-22468758)
chr3 (62-150)||(30990003-30990091)
[»] chr4 (1 HSPs)
chr4 (245-327)||(29611120-29611202)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 22207812 - 22207430
Alignment:
Q  14 atttgtagatgaagaatcctggttttgaaaaagtctttagtcacaggaagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatat 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22207812 atttgtagacgaagaatcctggttttgaaaaagtctttagtcacaggaagcaaagctgcacatccaggatcatgaggctgttgtccctcacatatcatat 22207713  T
Q  114 attcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagcttcggtcaa 213  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22207712 attcatcaatgacatcttgtatctgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagcttcggtcat 22207613  T
Q  214 tctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcatattcgttacttccttt 313  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22207612 tctatctgtattgttgatgaagtcttcaatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcatattggttacttccttt 22207513  T
Q  314 gatagtggaagcaaatggtcccgagctgatgaaagcaactgatcgcaagcaaaggagatcacagtgtcacacattttgttgtg 396  Q
     |||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22207512 aatagtggaagcaaatggtcccgagctaacggaagcaactgatcgaaagcaaaggagatcacagtgtcacacattttgttgtg 22207430  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 22459217 - 22459407
Alignment:
Q  107 atcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagctt 206  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| | |||||  ||||| ||||||||||||| || |  | |||||| |||||||| |    
T  22459217 atcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttgcattgtcatcttcagcat 22459316  T
Q  207 cggtcaatctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcat 297  Q
    | |  | ||||||||||||||||||||||| ||| |||||||| ||||| | ||||||||||| || ||||||||||||||| || |||||    
T  22459317 cagctattctatctgcattgttgatgaagttttcaatgctttcaagttcttctttcatgtctgaaatttcttttgggacacccctaatcat 22459407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 22482198 - 22482388
Alignment:
Q  107 atcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagctt 206  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| | |||||  ||||| ||||||||||||| || |  | |||||| |||||||| |    
T  22482198 atcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttgcattgtcatcttcagcat 22482297  T
Q  207 cggtcaatctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcat 297  Q
    | |  | ||||||||||||||||||||||| ||| |||||||| ||||| | ||||||||||| || ||||||||||||||| || |||||    
T  22482298 cagctattctatctgcattgttgatgaagttttcaatgctttcaagttcttctttcatgtctgaaatttcttttgggacacccctaatcat 22482388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 288
Target Start/End: Original strand, 22443500 - 22443681
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtatt---gtcttcttcagctt 206  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||| |||| ||||| |||||||||||   |  |  || |    |||||||||||| |    
T  22443500 atataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttgattttctgacttgtttccacgtcttcttcagcat 22443599  T
Q  207 cggtcaatctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacc 288  Q
    | | || ||||||||||||||||||||| | ||| || ||||||||||||| |||||  ||||||| |||||||||||||||    
T  22443600 cagccattctatctgcattgttgatgaatttttcaattctttctagttcatctttcaattctgcaatttcttttgggacacc 22443681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 339
Target Start/End: Original strand, 22437356 - 22437627
Alignment:
Q  71 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttg 170  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| |||||||||||||||| ||||| ||||||||||||| | ||||   | ||| |||    
T  22437356 gcacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttctattagcttcttcatccttg 22437455  T
Q  171 ctttgattccgtcgcgcgtatt---gtcttcttcagcttcggtcaatctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtc 267  Q
    |||||||| | || |   | ||   |||||||||  | || |  ||||||||| ||||| ||||||||||||| ||||| |||||||||| |||||  ||    
T  22437456 ctttgattgcatcacttctttttttgtcttcttcttcatcagcgaatctatcttcattgctgatgaagtcttccatgctctctagttcatctttcaaatc 22437555  T
Q  268 tgcaacttcttttgggacacctcttatcatattcgttacttcctttgatagtggaagcaaatggtcccgagc 339  Q
    ||||| ||||||||||||||| || ||||| ||   | || ||||| |||||||||||||||| || |||||    
T  22437556 tgcaatttcttttgggacacccctaatcatgttgaatgctacctttaatagtggaagcaaatgatcacgagc 22437627  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 22431909 - 22431977
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgatt 178  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  22431909 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatt 22431977  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 22368765 - 22368881
Alignment:
Q  214 tctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcatattcgttacttccttt 313  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||| |||||  ||||||| ||||||||||||||| || ||||| ||   | |||||||     
T  22368765 tctatccgcatcgttgatgaagtcttcaatgctttcaagttcatctttcaattctgcaatttcttttgggacacccctaatcatgttgaatgcttccttc 22368864  T
Q  314 gatagtggaagcaaatg 330  Q
     | ||||||||||||||    
T  22368865 aagagtggaagcaaatg 22368881  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 22358727 - 22358815
Alignment:
Q  71 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  22358727 gcacatccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctg 22358815  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 22631325 - 22631408
Alignment:
Q  214 tctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcat 297  Q
    |||||| |||| |||||||||| |||| || ||||| ||||||| |||||  ||||||| ||||||||||||||| || |||||    
T  22631325 tctatccgcatcgttgatgaagacttcaattctttcaagttcatctttcaattctgcaatttcttttgggacacccctaatcat 22631408  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 22636362 - 22636445
Alignment:
Q  214 tctatctgcattgttgatgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcat 297  Q
    |||||| |||| |||||||||| |||| || ||||| ||||||| |||||  ||||||| ||||||||||||||| || |||||    
T  22636362 tctatccgcatcgttgatgaagacttcaattctttcaagttcatctttcaattctgcaatttcttttgggacacccctaatcat 22636445  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 22368670 - 22368719
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||| |||||||||||||||| |||||||||||||| |||| |||||||    
T  22368670 atataatcatcaatgacatcttctatgtgaaaagatgtttctatcagctg 22368719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 22468804 - 22468853
Alignment:
Q  214 tctatctgcattgttgatgaagtcttcgatgctttctagttcatttttca 263  Q
    |||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  22468804 tctatccgcatcgttgatgaagtcttcaatgctttctagttcatctttca 22468853  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 22632626 - 22632675
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  22632626 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctg 22632675  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 22636267 - 22636316
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  22636267 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctg 22636316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 22631191 - 22631279
Alignment:
Q  71 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| ||||||||||||||||  ||||| |||||||||||| |||||||    
T  22631191 gcacatccaggatcaggagcatgttgttcctcatggaagatataatcatcaatgacatcttccatgtggaaagatgcttctatcagctg 22631279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 21936911 - 21936812
Alignment:
Q  60 gaagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    ||||||||||| |||||||| || |||||||||  |||||  ||   ||||||||||||||||||| ||||| ||||  ||||| |||||| || |||||    
T  21936911 gaagtaaagctacacatccatgaccatgaggcttctgtcctacatggatcatatattcatcaatgatatcttctatgcaaaaagctgcttccctaagctg 21936812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 22104480 - 22104393
Alignment:
Q  61 aagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgct 148  Q
    ||||| |||| |||||||||||||| ||||||| |||||  ||   |||||||| |||||||||| ||||| |||| |||||| ||||    
T  22104480 aagtatagctacacatccaggatcacgaggctgctgtcctacatggatcatatactcatcaatgatatcttctatgcgaaaagctgct 22104393  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 22354247 - 22354346
Alignment:
Q  231 tgaagtcttcgatgctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcatattcgttacttcctttgatagtggaagcaaatg 330  Q
    |||||||||| |||||||| ||||| | |||||  ||||||| ||||||||||||| | || ||||||||   | |||||||  | ||||||||||||||    
T  22354247 tgaagtcttcaatgctttcaagttcctctttcaattctgcaatttcttttgggacaaccctaatcatattgaatgcttccttcaagagtggaagcaaatg 22354346  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 2748729 - 2748683
Alignment:
Q  113 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2748729 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2748683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 2768800 - 2768754
Alignment:
Q  113 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2768800 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2768754  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 2839007 - 2839053
Alignment:
Q  113 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2839007 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2839053  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 2856217 - 2856263
Alignment:
Q  113 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2856217 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2856263  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 3221871 - 3221912
Alignment:
Q  118 atcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  3221871 atcaatcacatcttctatgtgaaaagatgcttctcttagctg 3221912  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 22370911 - 22370959
Alignment:
Q  110 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagct 158  Q
    |||||||||||||||||||||| ||||| |||||||  |||| ||||||    
T  22370911 atatattcatcaatgacatcttctatgtaaaaagatatttctttcagct 22370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 22468670 - 22468758
Alignment:
Q  71 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 159  Q
    |||||||||||||||  ||  |||||| |||||  ||  ||||| |||||||  ||||||| ||||||| ||||||||||| |||||||    
T  22468670 gcacatccaggatcagaagattgttgttcctcaagtaagatataatcatcaaccacatcttctatgtgataagatgcttctatcagctg 22468758  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 30990003 - 30990091
Alignment:
Q  62 agtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttc 150  Q
    ||||||| | ||||||||||||||||||| ||||||| | ||   |||| ||| ||||| |||| ||||| |||| |||||| ||||||    
T  30990003 agtaaagatacacatccaggatcatgaggatgttgtctcacatggatcaaataatcatcgatgatatcttctatgcgaaaagctgcttc 30990091  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 29611120 - 29611202
Alignment:
Q  245 ctttctagttcatttttcatgtctgcaacttcttttgggacacctcttatcatattcgttacttcctttgatagtggaagcaa 327  Q
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T  29611120 ctttcaagttcatctttcatgtccacaatttcttttgggacacccctaatcatgtttgttgcttcctttaatggtggaagcaa 29611202  T

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