View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_14 (Length: 387)
Name: NF4030_low_14
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6240810 - 6240968
Alignment:
| Q |
1 |
cattaatgttacttctaaaaataaatcaagcacaatttcaagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaacattcatc |
100 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6240810 |
cattaatgttacttctaaaagtaa-tcaatcacaatttcaagtagattcgtgaaaaagtcgttcgcatccggattggcttataattttagaacattcatc |
6240908 |
T |
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| Q |
101 |
agagaggagataggaaattgtgttggaaaaagaataattttattttcatttgtatccttc |
160 |
Q |
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| T |
6240909 |
agagaggagataggaaattgtgttggaaaaagaataattttattttcatttttatccttc |
6240968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6211917 - 6212075
Alignment:
| Q |
1 |
cattaatgttacttctaaaaataaatcaagcacaatttcaagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaacattcatc |
100 |
Q |
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| T |
6211917 |
cattaatgttacttctaaaaataa-tcaatcacaatttcatgtagattcgtgaaaaagttgttcgcatccggattggcttataattttagaacattcatc |
6212015 |
T |
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| Q |
101 |
agagaggagataggaaattgtgttggaaaaagaataattttattttcatttgtatccttc |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6212016 |
agagaggagataggaaattgtgttggaaaaagaataattttgttttcatttgtatccttc |
6212075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 6241033 - 6241104
Alignment:
| Q |
225 |
ttttaaaaggtttcgctaacaaatgtcagtgatttaaaaattaaaacaattgttactttcatgtataaaaaa |
296 |
Q |
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| T |
6241033 |
ttttaaagggtttcgctaacaaatgtcagtgatttaaaaatgaaaacaattgttactttcatgtataaaaaa |
6241104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 6212141 - 6212177
Alignment:
| Q |
257 |
tttaaaaattaaaacaattgttactttcatgtataaa |
293 |
Q |
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| T |
6212141 |
tttaaaaatgaaaacaattgttattttcatgtataaa |
6212177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 19115836 - 19115708
Alignment:
| Q |
1 |
cattaatgttacttctaaaaataaatcaagcacaatttcaagtagattcgtga---aaaagtcgttcgcatccagattggcttataattttagaacattc |
97 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||| || | || ||| ||| | | ||| ||||||||||||||| ||| |
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| T |
19115836 |
cattaatgttacttctaaaaatcaatcaatcacaatttcaagtagattcgtgaagtaatattccttcacattcggcttgtcttataattttagaatcttc |
19115737 |
T |
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| Q |
98 |
atcagagaggagataggaaattgtgttgg |
126 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
19115736 |
atcaaagaggagataggaaattgtgttgg |
19115708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 19610161 - 19610268
Alignment:
| Q |
5 |
aatgttacttctaaaaataaatcaagcacaatttcaagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaacattcatcagag |
104 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||| |||| | | || |||||||| || ||| |||||||||| |||| |||||||||| |
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| T |
19610161 |
aatgttacttctaaaaataaatcaatcacaattttaagtagatttgtgacataatccttcgcatctagcttgccttataatttcagaatcttcatcagag |
19610260 |
T |
|
| Q |
105 |
aggagata |
112 |
Q |
| |
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|||||||| |
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| T |
19610261 |
aggagata |
19610268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 703585 - 703548
Alignment:
| Q |
321 |
aagaattttgggttgaggagtttatgaatatttatagg |
358 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
703585 |
aagaattttgggttgaggagtttatgaatatttgtagg |
703548 |
T |
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