View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_16 (Length: 375)
Name: NF4030_low_16
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 11393265 - 11392915
Alignment:
| Q |
8 |
agattatactactgattaaatgtcacaaacgcctatc-ttataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgccaccaaagt |
106 |
Q |
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| T |
11393265 |
agattatactactgattaaatatcacaaacgcctatccttataaataaccgtggcatccctatgttatgaagcagaatacctcatgcatgacaccaaagt |
11393166 |
T |
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| Q |
107 |
tctatcgtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagac |
206 |
Q |
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| T |
11393165 |
tctatcgtttgagctaaatggaatggaaatcaaaaccaccattacagatcaaaagaaagtgattgacgaacatatatcgtctttcttacgccctacagac |
11393066 |
T |
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| Q |
207 |
aattatggaaccaaggtgatcggatttgataccgagtggcgtaaaattatccttaatgatcgtgatgaaaccaattccgggaccaaaccgggaactattc |
306 |
Q |
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| T |
11393065 |
aatcatggaaccaaggtgatcggatttgatactgagtggcgtaaaattatcgataaggatcaagatggaaccaattcccggaccaaaccgggaactattc |
11392966 |
T |
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| Q |
307 |
aactttgtgatggacattcgtgtcttattattgagttacattgtggctttc |
357 |
Q |
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| T |
11392965 |
aactttgtgatggacattcgtgtcttattattgagttacattattgctttc |
11392915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 11387269 - 11386927
Alignment:
| Q |
10 |
attatactactgattaaatgtcacaaacgcctatct-tataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgccaccaaagttc |
108 |
Q |
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| T |
11387269 |
attatactactgatcaaatgtcacacacgcttatccctataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgacaccaaagttc |
11387170 |
T |
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| Q |
109 |
tatcgtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaa |
208 |
Q |
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| T |
11387169 |
tatcgtttgagctaaatggaatggaaatcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatgtcgtctttcttacaccctacagacaa |
11387070 |
T |
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| Q |
209 |
ttatggaaccaaggtgatcggatttgataccgagtggcgtaaaattatc-cttaatgatcgtgatgaaaccaattccgggaccaaaccgggaactattca |
307 |
Q |
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| T |
11387069 |
ttatgtaaccaaggtgatcggatttgataccgagtggcgtaaaattatcggtaaatgatcatgatgaaaccaattcccagaccaaaccgggaactcttca |
11386970 |
T |
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| Q |
308 |
actttgtgatggacattcgtgtcttattattgagttacattgt |
350 |
Q |
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| T |
11386969 |
actttgtgatggacattcatgtcttattattgagttacattgt |
11386927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 17198660 - 17198516
Alignment:
| Q |
113 |
gtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaattat |
212 |
Q |
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||||||||| |||||| |||||| ||||||| | |||||| || ||||| ||||||||| |||||||| ||||||||||||||||| ||||| | |
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| T |
17198660 |
gtttgagcttaatggagatgaaatccaaaccaccgtgacagatgatgagaaattgattgacgatcatatatcatctttcttacgccctaccaacaatcac |
17198561 |
T |
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| Q |
213 |
ggaaccaaggtgatcggatttgataccgagtggcgtaaaattatc |
257 |
Q |
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| T |
17198560 |
ggaacgaaggttattgggattgataccgagtggcgtccaattatc |
17198516 |
T |
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