View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_18 (Length: 369)
Name: NF4030_low_18
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 36149690 - 36149358
Alignment:
| Q |
21 |
agctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaagaccgagaagaagaacttgtcaattacacatatgcactcaaaataga |
120 |
Q |
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| T |
36149690 |
agctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaagaccaagaagaagcacttgtcaattacacatgtgcactcaaaataga |
36149591 |
T |
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| Q |
121 |
tgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtc |
220 |
Q |
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| T |
36149590 |
tgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtc |
36149491 |
T |
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| Q |
221 |
gaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctc |
320 |
Q |
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| T |
36149490 |
gaagtaattccacacacaatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctc |
36149391 |
T |
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| Q |
321 |
ctaatcaaggacaagaagtagcacacgtgaagg |
353 |
Q |
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| T |
36149390 |
ctaatcaaggacaagaagtagcacacgtgaagg |
36149358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 36083533 - 36083446
Alignment:
| Q |
101 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctc |
185 |
Q |
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| T |
36083533 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctc |
36083446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 36149799 - 36149636
Alignment:
| Q |
101 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctcctt------ |
194 |
Q |
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| T |
36149799 |
acatgtgcactcaaaatagatgagaaagaagaaga---ctctcccaagctagaaaaagaagtgcaaatgaaggaaagtgattctccgcctccttcaccac |
36149703 |
T |
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| Q |
195 |
caccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaaga |
261 |
Q |
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| T |
36149702 |
caccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
36149636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 36083556 - 36083458
Alignment:
| Q |
258 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagg |
353 |
Q |
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| T |
36083556 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagg |
36083458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 36149822 - 36149759
Alignment:
| Q |
258 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
321 |
Q |
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| T |
36149822 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaagactctcc |
36149759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 101 - 338
Target Start/End: Original strand, 26527381 - 26527621
Alignment:
| Q |
101 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgc |
200 |
Q |
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| T |
26527381 |
acatgtgcactcaaaatagatgagatagaagaa---cactctcccaagctagaaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccac |
26527477 |
T |
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| Q |
201 |
------cgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
294 |
Q |
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| T |
26527478 |
taccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
26527577 |
T |
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| Q |
295 |
aatagacgacaaagaagaacactctcctaatcaaggacaagaag |
338 |
Q |
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| T |
26527578 |
aatagacgacaaagaagaacagtctcctaagcaaggacaagaag |
26527621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 26527358 - 26527421
Alignment:
| Q |
258 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
321 |
Q |
| |
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||||||||||||| || |||||||||| ||||| |||||||| || | ||||||||||||||| |
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| T |
26527358 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcc |
26527421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 26527498 - 26527544
Alignment:
| Q |
29 |
gaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
75 |
Q |
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| T |
26527498 |
gaagtggaagtgattccccacaccatggaagctcatgttcacaaaga |
26527544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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