View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_21 (Length: 363)

Name: NF4030_low_21
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_21
NF4030_low_21
[»] chr6 (12 HSPs)
chr6 (11-348)||(2454059-2454399)
chr6 (11-241)||(7176437-7176659)
chr6 (21-237)||(9826747-9826963)
chr6 (86-247)||(23301411-23301572)
chr6 (23-247)||(23300425-23300641)
chr6 (11-181)||(11846306-11846476)
chr6 (37-246)||(26186657-26186866)
chr6 (11-123)||(11971534-11971646)
chr6 (37-184)||(23585916-23586063)
chr6 (21-203)||(26879823-26880005)
chr6 (11-192)||(32613802-32613977)
chr6 (72-125)||(5076251-5076304)
[»] chr3 (18 HSPs)
chr3 (23-241)||(44471023-44471241)
chr3 (31-249)||(26757591-26757809)
chr3 (16-247)||(30554494-30554725)
chr3 (11-193)||(28550497-28550679)
chr3 (19-150)||(54246529-54246660)
chr3 (11-192)||(779447-779629)
chr3 (45-192)||(44681981-44682129)
chr3 (16-130)||(23659501-23659615)
chr3 (16-249)||(46892602-46892817)
chr3 (21-148)||(26918402-26918529)
chr3 (16-247)||(11503281-11503512)
chr3 (23-118)||(33231472-33231567)
chr3 (37-184)||(13870262-13870408)
chr3 (80-165)||(44285642-44285727)
chr3 (21-196)||(27524068-27524243)
chr3 (83-241)||(12937750-12937908)
chr3 (200-247)||(33231591-33231638)
chr3 (206-247)||(44682120-44682161)
[»] chr4 (8 HSPs)
chr4 (16-241)||(53393110-53393335)
chr4 (37-241)||(8606108-8606312)
chr4 (11-165)||(42141330-42141476)
chr4 (88-247)||(23107938-23108097)
chr4 (16-123)||(8056836-8056942)
chr4 (206-241)||(13207511-13207546)
chr4 (206-248)||(39839112-39839154)
chr4 (109-149)||(38264847-38264887)
[»] chr2 (18 HSPs)
chr2 (11-241)||(5526223-5526452)
chr2 (21-247)||(29109122-29109348)
chr2 (51-247)||(3919845-3920041)
chr2 (21-197)||(37630380-37630556)
chr2 (21-194)||(27866665-27866836)
chr2 (21-164)||(38607049-38607192)
chr2 (31-248)||(4240667-4240876)
chr2 (60-163)||(7772060-7772163)
chr2 (31-134)||(30906828-30906930)
chr2 (82-247)||(35954766-35954931)
chr2 (11-148)||(33036987-33037116)
chr2 (88-194)||(4638207-4638313)
chr2 (88-241)||(13852296-13852449)
chr2 (88-249)||(31111411-31111572)
chr2 (80-247)||(35961755-35961922)
chr2 (85-148)||(44018966-44019029)
chr2 (78-148)||(3690109-3690179)
chr2 (95-247)||(12893947-12894099)
[»] chr8 (13 HSPs)
chr8 (16-241)||(3767611-3767826)
chr8 (16-249)||(9505013-9505247)
chr8 (21-248)||(16570822-16571048)
chr8 (11-247)||(32321799-32322035)
chr8 (88-165)||(34760833-34760910)
chr8 (11-148)||(9040511-9040648)
chr8 (11-194)||(25456082-25456265)
chr8 (70-197)||(40434962-40435089)
chr8 (21-147)||(37379993-37380119)
chr8 (87-247)||(35948827-35948987)
chr8 (78-125)||(3555435-3555482)
chr8 (200-241)||(20860457-20860498)
chr8 (11-144)||(25808235-25808368)
[»] chr1 (13 HSPs)
chr1 (69-250)||(512950-513131)
chr1 (62-248)||(8414579-8414765)
chr1 (22-241)||(11911590-11911810)
chr1 (80-241)||(27320483-27320644)
chr1 (31-160)||(17530691-17530820)
chr1 (31-123)||(32678426-32678518)
chr1 (88-247)||(16584891-16585050)
chr1 (88-193)||(25785805-25785910)
chr1 (173-241)||(32678532-32678600)
chr1 (32-242)||(4407741-4407951)
chr1 (78-143)||(44581820-44581885)
chr1 (214-250)||(33857598-33857634)
chr1 (214-250)||(33923289-33923325)
[»] chr7 (20 HSPs)
chr7 (11-248)||(48070613-48070850)
chr7 (31-241)||(12471704-12471913)
chr7 (31-241)||(12470979-12471189)
chr7 (11-165)||(44523622-44523775)
chr7 (21-163)||(12470183-12470325)
chr7 (31-241)||(25545177-25545387)
chr7 (31-196)||(31136196-31136356)
chr7 (80-249)||(3996962-3997130)
chr7 (157-243)||(12013027-12013113)
chr7 (64-155)||(21378567-21378657)
chr7 (88-248)||(7352396-7352556)
chr7 (78-249)||(27226920-27227091)
chr7 (21-123)||(35738093-35738195)
chr7 (86-197)||(46265328-46265439)
chr7 (78-184)||(22331994-22332100)
chr7 (31-123)||(2197640-2197732)
chr7 (25-140)||(12012904-12013022)
chr7 (86-165)||(2923035-2923114)
chr7 (32-126)||(45595452-45595546)
chr7 (96-180)||(39695149-39695233)
[»] chr5 (9 HSPs)
chr5 (31-232)||(1498164-1498365)
chr5 (21-219)||(7239239-7239442)
chr5 (21-219)||(7244415-7244618)
chr5 (61-243)||(29126087-29126269)
chr5 (110-252)||(31895891-31896033)
chr5 (88-247)||(16746567-16746726)
chr5 (37-246)||(17770213-17770421)
chr5 (31-123)||(39786072-39786164)
chr5 (69-165)||(41092009-41092105)
[»] scaffold0070 (2 HSPs)
scaffold0070 (42-165)||(13828-13951)
scaffold0070 (177-252)||(33724-33799)
[»] scaffold0564 (1 HSPs)
scaffold0564 (90-248)||(6310-6472)
[»] scaffold0590 (1 HSPs)
scaffold0590 (16-144)||(8270-8398)
[»] scaffold0565 (1 HSPs)
scaffold0565 (90-180)||(1873-1963)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 2454059 - 2454399
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  2454059 cataggtgtttgtgaggagcgataagattactaaaatggggagtgaggctagcatcgattcggtttgttggttctttggatctcaaaattaaaaaccaag 2454158  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 210  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2454159 aatcgaaccaaactatatcagtttaggttggttcggttcgattttgaaccgaacctaataaagtcggatactttctcggtttgattccatttgaattttc 2454258  T
Q  211 gatttcatcggttttgtccgaaccacttacatccctaattatagatagatacatttattccatgaatttgaag---nnnnnnnnnnnnncgaccacagta 307  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||    
T  2454259 aatttcatcggttttgtccgaaccacttacatccctaattatagatagatacatttattccatgaatttgaagttttttttttttttttcgaccacagta 2454358  T
Q  308 gtttaactattataactagatttatgtaatgagcatatact 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2454359 gtttaactattataactagatttatgtaatgagcatatact 2454399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 7176437 - 7176659
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||  |||||||        | |||||||||||||| ||||||| |     
T  7176437 cataagtgtttgtgaggagagataatattactaaaatggggagtgaggttagcatctgttcggtt--------cattggatctcaaaataaaaaactgat 7176528  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 210  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||| || || || ||||||||| |||| |||||||  || ||||||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  211 gatttcatcggttttgtccgaaccacttaca 241  Q
    | |||||||||||||||||||| ||||||||    
T  7176629 ggtttcatcggttttgtccgaaacacttaca 7176659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 9826963 - 9826747
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||||||||| ||| ||||||| || ||||  || ||||  |||||||||||||| ||||||||||||||  |||| |||||||    
T  9826963 tgtgaggagggataatattactaaaacgggaagtgaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccgagaatcgaacca 9826864  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaa-gtcggatactttctcggtttggttccatttgagttttcgatttcatc 219  Q
    ||||| ||| ||||| |||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||||||  ||||| |||| | |||| ||    
T  9826863 aactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatacttt-tcggtttggttcagtttgaatttttggtttcttc 9826765  T
Q  220 ggttttgtccgaaccact 237  Q
    |||||| |||||||||||    
T  9826764 ggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 23301572 - 23301411
Alignment:
Q  86 ttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttc 185  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| || || |||| ||  |||     
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttt 23301473  T
Q  186 tcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    ||||||||||||  ||||| |||||| ||||| || | ||| || |||||||||||||||||    
T  23301472 tcggtttggttcagtttgaattttcggtttcaacgatgttgcccaaaccacttacatcccta 23301411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 23300641 - 23300425
Alignment:
Q  23 tgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaa 122  Q
    ||||||| ||||| ||||||||||||| |||||| | |||||||| ||||||||||        ||||||||||||||||||||  |||||||||| |||    
T  23300641 tgaggagggataatattactaaaatggagagtgaagttagcatcggttcggtttgt--------tggatctcaaaattaaaaaccgagaaccgaactaaa 23300550  T
Q  123 ctatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggt 222  Q
    ||| |||||||||||||||||||||||  |||| ||||||||| || || ||||  | |||| ||||||||||||  ||||| |||||| ||||| || |    
T  23300549 ctagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcggtttggttcggtttgaattttcggtttcaacgat 23300450  T
Q  223 tttgtccgaaccacttacatcccta 247  Q
     ||| || |||||||||||||||||    
T  23300449 gttgcccaaaccacttacatcccta 23300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 11846476 - 11846306
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||| ||||| |||||||||||||||||||||| ||||||| ||| ||||  | ||||| |||||||||||||||||||||  ||    
T  11846476 cataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcaatttggttcattggttcattggatctcaaaattaaaaaccgag 11846377  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatac 181  Q
    ||||||||||||||| ||| ||||| |||||||| ||||| |||| |||| |||| || || |||||||||    
T  11846376 aaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtcggatac 11846306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 26186657 - 26186866
Alignment:
Q  37 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 136  Q
    |||||||||||||||||  ||| ||| |||| ||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||| ||| |||||     
T  26186657 attactaaaatggggagcaaggttagaatcggttcgactcatcggttctttggattttaaaattaaaaaccgagaaccaaaccaaactagatcggtttaa 26186756  T
Q  137 gttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccac 236  Q
    ||||||||  ||| ||||  |||| || |  | ||  ||  ||||||| |  ||||||||| |||| | |||||||||| ||||||||||||||||||||    
T  26186757 gttggttcaattcaatttagaaccaaatcagacaagatcaaatacttttttagtttggttcaatttaaattttcgattttatcggttttgtccgaaccac 26186856  T
Q  237 ttacatccct 246  Q
    ||||| ||||    
T  26186857 ttacacccct 26186866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 11971646 - 11971534
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||| ||||| |||||||||||||||||||||| |||||||  || ||||  | | ||| ||||||||| |||||||||||  ||    
T  11971646 cataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcagtttggttcattgattcattggatctctaaattaaaaaccgag 11971547  T
Q  111 aaccgaaccaaac 123  Q
    |||||||||||||    
T  11971546 aaccgaaccaaac 11971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 23586063 - 23585916
Alignment:
Q  37 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 136  Q
    |||| |||||||| ||||||| |||| |||| |||  ||| ||  || |||| ||||||||||||||| |  |||||| |||||||||||||| |||||     
T  23586063 attaataaaatggagagtgagactagtatcggttcaatttatcaattttttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttac 23585964  T
Q  137 gttggttcggttcgatttttaaccgaacctaataaagtcggatacttt 184  Q
    ||| ||| |||||| |||| ||||||||  || || ||||||||||||    
T  23585963 gttagtttggttcggttttgaaccgaacaaaacaaggtcggatacttt 23585916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 26880005 - 26879823
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||| | ||||| ||| || || || ||||| |||||||  ||||||| ||| |||||| ||| ||||||| |||||  |||||    
T  26880005 tgtgaggagggataatattagtgaaatgaggaatggggttaccatcggttcggttcatcggttccttgaatctcacaatgaaaaactgagaactcaacca 26879906  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttg 203  Q
    | | |  ||||||||  ||||||||||| |||||| ||||||| |  | || ||||  |||||| |||||||||||| |||||    
T  26879905 accaaggtcagtttatattggttcggtttgattttgaaccgaagcagaaaaggtcgattactttttcggtttggttcaatttg 26879823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 32613802 - 32613977
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||   |||| |||| ||||||||| | ||||| |||||||| || ||||  || |||||||||| ||      ||||||| ||     
T  32613802 cataagtgtgtgtgaggatgaataatattattaaaatgggaactgaggttagcatcggtttggttcatcagttctttggaact------taaaaaccaaa 32613895  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 192  Q
    ||  ||||||||||| ||| |||||||||||||||||||| |||| |||| | || || |||||| |||||||| |||||||    
T  32613896 aatggaaccaaactagatcggtttaggttggttcggttcggttttgaaccaagccaaacaaagtcagatactttttcggttt 32613977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 5076304 - 5076251
Alignment:
Q  72 ggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaacta 125  Q
    ||||| |||||||||||||| ||||||| ||||||  ||||| |||||||||||    
T  5076304 ggtttatcggttctttggatttcaaaataaaaaaccgagaacggaaccaaacta 5076251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 44471241 - 44471023
Alignment:
Q  23 tgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaa 122  Q
    ||||||| ||||| ||||||||| |||||||| | | |||||||| |||||||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  44471241 tgaggagggataatattactaaactggggagttatgttagcatcggttcggttcatcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaa 44471142  T
Q  123 ctatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggt 222  Q
    ||| ||| |||||| |||||| |||||| |||| ||||||||  || || ||||||||| || ||||||||||||  ||||  |||||||||||||||||    
T  44471141 ctagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggttcggtttggattttcgatttcatcggt 44471042  T
Q  223 tttgtccgaaccacttaca 241  Q
    |||||||||||||||||||    
T  44471041 tttgtccgaaccacttaca 44471023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 26757809 - 26757591
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| ||||||||||||| |||||||| ||  |||| ||| |||| ||| ||||||||||||||||||||||| | |||||||||||||| |||||||     
T  26757809 gataatattactaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcg 26757710  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccg 230  Q
     ||||||||||||||||||  |||| |||  |||| || || |||| ||||||| ||| ||| |||  |||||  ||||||||||||| ||||||||||     
T  26757709 atttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcgattttgtttgatttggattttcgatttcattggttttgtcca 26757610  T
Q  231 aaccacttacatccctaat 249  Q
    ||||||||||| |||||||    
T  26757609 aaccacttacacccctaat 26757591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 30554494 - 30554725
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||| ||| |||||  |||| ||| |||| ||||||| | |||||| |||| ||  || ||||||||||| |||||||||||||   |||||||    
T  30554494 gtgtgtgtgatgagggataatgttacaaaattgggaagtgaggatggcatcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccg 30554593  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||||||  || || |||||||||||| ||||||| | || |||||  |||||| |||    
T  30554594 aaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagctcgatttggattttcggttt 30554693  T
Q  216 catcggttttgtccgaaccacttacatcccta 247  Q
    ||||| |||||| ||||||| ||||| |||||    
T  30554694 catcgattttgttcgaaccatttacaccccta 30554725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 28550679 - 28550497
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||| ||||| ||| | ||||| |||||||||| || |||||||||||||  |||||||||| ||||||||||||||||||  ||    
T  28550679 cataagtgtgtgtgaggagagataatattgccaaaatagggagtgaggttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccgag 28550580  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttg 193  Q
    || |||||||||||| ||| ||||| ||||||||||||||  ||| ||||||||| || |||||  |||||||| ||||||||    
T  28550579 aatcgaaccaaactagatccgtttaagttggttcggttcggatttgaaccgaaccaaacaaagttagatactttttcggtttg 28550497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 54246660 - 54246529
Alignment:
Q  19 tttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaac 118  Q
    ||||||||||||||| | |||| ||||||||||||||| | |||||||| || |||| ||||||||||||||||||||||||||||| | ||||||||||    
T  54246660 tttgtgaggagcgatgatattaataaaatggggagtgaagttagcatcggtttggttcgtcggttctttggatctcaaaattaaaaattgagaaccgaac 54246561  T
Q  119 caaactatatcagtttaggttggttcggttcg 150  Q
    |||||  |||| |||| |||||||||||||||    
T  54246560 caaacattatcggtttgggttggttcggttcg 54246529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 779447 - 779629
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaa-ttaaaaactaa 109  Q
    |||| |||| ||||||||| ||||  ||||| ||||||| |||||||  |||||||| |||||||  |||||||||||||| |||||| |||||||| ||    
T  779447 cataagtgtatgtgaggagtgatagtattacaaaaatggagagtgagattagcatcggttcggttcatcggttctttggatttcaaaaattaaaaaccaa 779546  T
Q  110 gaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 192  Q
    |||||||||||||||| ||  ||||||||||||||| |||  |||| ||||||||  || || || ||||||||| |||||||    
T  779547 gaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 44681981 - 44682129
Alignment:
Q  45 aatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttagg-ttggtt 143  Q
    |||||| ||||||| |||||||| |||||||||||||||| | |||| |||||||||||||| ||||||| |||||||||| ||| ||||||| ||||||    
T  44681981 aatgggaagtgaggttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttaggtttggtt 44682080  T
Q  144 cggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 192  Q
    | ||||| |||| | ||||||| || || |||| ||||||| |||||||    
T  44682081 cagttcggttttgatccgaaccaaacaaggtcgtatactttttcggttt 44682129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 23659615 - 23659501
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||||||| ||||| ||||||||||||| |||||| | |||||||| |||||||   |||||| ||||||||||||||||||||| ||||||||    
T  23659615 gtgtgtgtgaggagggataatattactaaaatggagagtgatgttagcatcggttcggttcaccggttcattggatctcaaaattaaaaaccaagaaccg 23659516  T
Q  116 aaccaaactatatca 130  Q
    || ||||||| ||||    
T  23659515 aatcaaactagatca 23659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 46892817 - 46892602
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||| ||| ||||| |||||||||||| ||||||||| ||||||||     |||||   |||| |||||||||||||||||||||  |||| ||    
T  46892817 gtgtgtgtgatgagggataatattactaaaatgaggagtgaggttagcatcg-----gtttg---gttcattggatctcaaaattaaaaaccgagaatcg 46892726  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||||||| ||          ||||| |||||| |||| ||||||||| || || |||||||| ||| ||||||||||||  ||||| ||||   |||    
T  46892725 aaccaaactagat----------tggtttggttcggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgttt 46892636  T
Q  216 catcggttttgtccgaaccacttacatccctaat 249  Q
    ||||||||||| ||||||||||||||||| ||||    
T  46892635 catcggttttgcccgaaccacttacatccataat 46892602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 26918402 - 26918529
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| ||||||||||| ||||||  || |||||||  |||| ||  |||| |||||| |||||||||||||||| | ||||| ||||||    
T  26918402 tgtgaggagggataatattactaaaatagggagtagggttagcatcagttcgattcatcggctctttgaatctcaaaattaaaaattgagaactgaacca 26918501  T
Q  121 aactatatcagtttaggttggttcggtt 148  Q
    ||||| |||| |||||||||||||||||    
T  26918502 aactagatcaatttaggttggttcggtt 26918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 11503281 - 11503512
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||||||| ||||| | || ||||||||||||||||| |||||| | |||||||| ||||||  |||||||||||||| |||||   ||||||     
T  11503281 gtgtgtgtgaggagggataataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaacca 11503380  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||||  | ||| |||| | ||||||||||||| |||| ||||  |||  | || ||||||||| || | ||||||||||  ||||   ||||  |||    
T  11503381 aaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttggttcggtttggactttcagttt 11503480  T
Q  216 catcggttttgtccgaaccacttacatcccta 247  Q
    |||||||||| ||  |||| |||||| |||||    
T  11503481 catcggttttatcttaaccgcttacaccccta 11503512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 33231472 - 33231567
Alignment:
Q  23 tgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaac 118  Q
    |||||||  |||| |||||||||||||||||||||| |||||||| |||||||  ||||||||| | || |||||||||||||| |||||||||||    
T  33231472 tgaggaggtataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcttcgaatttcaaaattaaaaaccaagaaccgaac 33231567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 13870408 - 13870262
Alignment:
Q  37 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 136  Q
    |||| |||||||||| |||||  |||||||| |||||| | |||||||||||||||||||||| |||||| |||||||||| ||||| ||| | ||||||    
T  13870408 attagtaaaatggggggtgagt-tagcatcggttcggtctttcggttctttggatctcaaaatcaaaaaccaagaaccgaatcaaacaataccggtttag 13870310  T
Q  137 gttggttcggttcgatttttaaccgaacctaataaagtcggatacttt 184  Q
    |  |||| | ||||  ||| |||||||||  | || ||||||||||||    
T  13870309 gccggtttgattcggctttgaaccgaaccagacaaggtcggatacttt 13870262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 44285727 - 44285642
Alignment:
Q  80 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||||| |||  ||||||||||||||||||| |||| |||||||||    
T  44285727 ggttctttgaatttcaaaattaaaaaccgagaactgaaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaacc 44285642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 27524243 - 27524068
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| | || |||||||||||||| || || ||| | |||||||  ||| ||| |||||||| ||||||||||||  ||||||||||||    
T  27524243 tgtgaggagagataataatagtaaaatggggagtggggttaccattggttcggttcatcgattccttggatctgaaaattaaaaacagagaaccgaacca 27524144  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggtt 196  Q
    ||| |  ||  ||||| |||||| |||| | |||| | ||||||| || || |||| |||| || |||||||||||    
T  27524143 aacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtt 27524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 12937750 - 12937908
Alignment:
Q  83 tctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatact 182  Q
    ||||||||||| || || ||||| | |||||||||||||| |  ||| |||||||||||||||||||| |||| || | |||| || ||| ||  |||||    
T  12937750 tctttggatcttaagatgaaaaattgagaaccgaaccaaaattgatcggtttaggttggttcggttcggttttcaatcaaaccaaacaaaatctaatact 12937849  T
Q  183 ttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    || ||| ||| ||||  ||||  |||||| |||||||| |||| |||||| ||||||||    
T  12937850 ttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttaca 12937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 33231591 - 33231638
Alignment:
Q  200 tttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    ||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  33231591 tttgaattttcggtttcatcgattttgtccgaaccacttacaccccta 33231638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 44682120 - 44682161
Alignment:
Q  206 ttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    |||||| ||||||||||||||||| ||||||||||| |||||    
T  44682120 ttttcggtttcatcggttttgtccaaaccacttacaccccta 44682161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 53393110 - 53393335
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||| ||| ||||| |||||||||||||  ||||||| |||||||| |||||||  ||||||| |||||| ||||| ||| ||||  |||||||    
T  53393110 gtgtgtgtgaagagggataatattactaaaatggaaagtgaggttagcatcggttcggttcatcggttcattggatttcaaagttataaaccgagaaccg 53393209  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||||||| ||| |||||||||||||||||||  |||| ||||||||| || || |||||||||||| | ||||||||||  ||||  |||||| |||    
T  53393210 aaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggattttcggttt 53393309  T
Q  216 catcggttttgtccgaaccacttaca 241  Q
    ||||||||||||||||||||||||||    
T  53393310 catcggttttgtccgaaccacttaca 53393335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 8606108 - 8606312
Alignment:
Q  37 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 136  Q
    |||| |||||||||||||| || || ||||| |||| ||  | ||||| |||||||||||||| ||||||| ||||||||||||| | | ||| ||||||    
T  8606108 attagtaaaatggggagtgtggttaccatcggttcgattcattggttccttggatctcaaaatgaaaaactgagaaccgaaccaaccaagatcggtttag 8606207  T
Q  137 gttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccac 236  Q
     |||||||| || | |||| |||||| || || ||||| ||||||||| |||||||||||  ||||    | ||  |||| |||||||||||||||||||    
T  8606208 attggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactatcagtttcgtcggttttgtccgaaccac 8606307  T
Q  237 ttaca 241  Q
    |||||    
T  8606308 ttaca 8606312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 42141476 - 42141330
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| |||||||||  |||| |||||||||||| ||||||||  |||||||| |||||||        ||||||||||||||||||||||| |||    
T  42141476 cataagtgtgtgtgaggaggtataatattactaaaatgaggagtgagtttagcatcggttcggtt--------ctttggatctcaaaattaaaaaccaag 42141385  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    |||||||||||| || |||  |||||||| |||| ||||| |||| |||||||||    
T  42141384 aaccgaaccaaagtagatcgatttaggtttgttcagttcggttttgaaccgaacc 42141330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 23107938 - 23108097
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    ||||||| |||| |||||| | ||| | |||||||||| ||| |||| | ||||||||| ||| |||  |||| |||| || || |||||||| |||  |    
T  23107938 ggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaaacaaggtcggatatttttcc 23108037  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
     |||||||||  ||||   ||||| |||| | |||||||||||||||||||||| |||||    
T  23108038 tgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 8056942 - 8056836
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||||||  ||||| |||| |||||||||||||| || ||| |||| ||| |||  ||||||  |||||||||||||| |||| |  |||||||    
T  8056942 gtgtgtgtgaggaaggataatattagtaaaatggggagtggggttaggatcggttcagttcatcggtttcttggatctcaaaatgaaaatc-gagaaccg 8056844  T
Q  116 aaccaaac 123  Q
    ||||||||    
T  8056843 aaccaaac 8056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 13207511 - 13207546
Alignment:
Q  206 ttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13207511 ttttcgatttcatcggttttgtccgaaccgcttaca 13207546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 39839112 - 39839154
Alignment:
Q  206 ttttcgatttcatcggttttgtccgaaccacttacatccctaa 248  Q
    |||||| |||||||||||| |||||||||||||||| ||||||    
T  39839112 ttttcggtttcatcggtttcgtccgaaccacttacacccctaa 39839154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 38264847 - 38264887
Alignment:
Q  109 agaaccgaaccaaactatatcagtttaggttggttcggttc 149  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  38264847 agaaccaaaccaaattaaatcagtttaggttggttcggttc 38264887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 5526452 - 5526223
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||| ||||| ||||| | |||||||||||||||||||  |||||||| |||||||  || ||||||||||||||||||||||||||| ||    
T  5526452 cataagtgtgtgtaaggagggataataatactaaaatggggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgag 5526353  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 210  Q
    ||||||||||||||| ||| |||||||||||||| ||||  |||| ||||||||  || || ||||||||| || |||||||||||  |||||  |||||    
T  5526352 aaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggattttc 5526254  T
Q  211 gatttcatcggttttgtccgaaccacttaca 241  Q
    |||||| | ||||||||||| ||||||||||    
T  5526253 gatttctttggttttgtccggaccacttaca 5526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 29109122 - 29109348
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||| | ||||| |||||||||||||| ||  ||| ||||||||||| ||||  |||||||||||||||||||||||||||||  |||||| |||||    
T  29109122 tgtgaggggggataatattactaaaatgggaaggaaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaaacca 29109221  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcg 220  Q
    ||||| ||  |||||||||| ||||||||| |||| ||| ||||| || || |||||||| ||| || |||||||||  ||||  |||||  |||||||     
T  29109222 aactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttcagtttggttcggtttggattttcagtttcatca 29109321  T
Q  221 gttttgtccgaaccacttacatcccta 247  Q
    ||||||||||||||||||||| |||||    
T  29109322 gttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 3919845 - 3920041
Alignment:
Q  51 gagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcg 150  Q
    |||||| | |||||||| |||||||  |||||||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||| |||||||||||||    
T  3919845 gagtgaagttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcg 3919944  T
Q  151 atttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
     |||| |||| |||| || ||||||| || |||| |||||||| |||  ||||| |||| | |||||| |||||||| | ||||| |||||||||||    
T  3919945 gttttgaaccaaaccaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaaccagttacatcccta 3920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 37630556 - 37630380
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| ||||||||| |||||||||| | ||||||| ||||||||   |||||| |||||||||||||||||||||  ||||| ||||||    
T  37630556 tgtgaggagggataatattactaaagtggggagtgatgttagcatccattcggttcaccggttcattggatctcaaaattaaaaaccgagaactgaacca 37630457  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttc 197  Q
    ||||| ||||||||||||||||| || |||||||| |||| |||| |  || ||  |||||||| ||||||||||||    
T  37630456 aactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttc 37630380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 27866836 - 27866665
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| ||||||||||||| |||||||| || ||||| ||| |||  ||||||||| |||||||||||||||||||  |||| |||||||    
T  27866836 tgtgaggagtgataatattactaaaatggtgagtgagg-taacatcggttcagttcatcggttcttgggatctcaaaattaaaaaccgagaatcgaacca 27866738  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 194  Q
    ||||  |||| |||| |||||||| ||||| |||| ||||||||| |  || |||||||||||| |||||||||    
T  27866737 aactcgatcaatttaagttggttcagttcggttttgaaccgaaccaagcaaggtcggatacttt-tcggtttgg 27866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 38607192 - 38607049
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||| |||||||| ||||| || ||||||| | ||||||  |||||| | ||||||||||||| |||||| |||||||||||||    
T  38607192 tgtgaggagggataacattagtaaaatggcgagtgtggttagcatcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaacca 38607093  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaac 164  Q
    ||| |  ||||||||| ||||||||||||| |||| || |||||    
T  38607092 aacaaggtcagtttagattggttcggttcggttttgaatcgaac 38607049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 4240876 - 4240667
Alignment:
Q  31 gataaaattactaaaa-tggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatc 129  Q
    ||||| |||||||||| || ||||| | | |||||||| || ||||| |||| ||||||||||||||||||||||   ||||||| ||| ||||||||||    
T  4240876 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaaactaaactatatc 4240777  T
Q  130 agtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtcc 229  Q
      ||| |||||||||||||||||||| ||  ||||| || || |||| |||         ||||||||   |||  |||||| ||||||| |||||||||    
T  4240776 gattttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggcttggattttcggtttcatcagttttgtcc 4240686  T
Q  230 gaaccacttacatccctaa 248  Q
     ||||||||||||||||||    
T  4240685 aaaccacttacatccctaa 4240667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 7772060 - 7772163
Alignment:
Q  60 tagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaac 159  Q
    ||||||||||||  ||  ||||||||||  |||| ||||| |||||| || ||||||||||||||| ||| |||||| |||||||||||||||||| |||    
T  7772060 tagcatcgattcaattcatcggttctttcaatctgaaaatcaaaaaccaaaaaccgaaccaaactagatcggtttagcttggttcggttcgattttaaac 7772159  T
Q  160 cgaa 163  Q
    ||||    
T  7772160 cgaa 7772163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 30906828 - 30906930
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| |||||||||||||| ||||||| || ||||||||| |||| | ||||||||||||||||||||| ||| |  ||||||||| |||||||||||     
T  30906828 gataatattactaaaatgggaagtgaggttaccatcgattcagtttattggttctttggatctcaaaatt-aaatccgagaaccgaatcaaactatatcg 30906926  T
Q  131 gttt 134  Q
    ||||    
T  30906927 gttt 30906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 35954766 - 35954931
Alignment:
Q  82 ttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatac 181  Q
    |||||||||||||||||| ||||||| |||||| ||||||| || |||   |||||||||||| |||||||||| |||| |||  || || |||||||||    
T  35954766 ttctttggatctcaaaatcaaaaactgagaaccaaaccaaattagatcgagttaggttggttcagttcgattttaaaccaaacaaaacaaggtcggatac 35954865  T
Q  182 tttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    ||| ||| |||| |||  ||| | |||| | || | ||| ||||||  ||||| ||||||||||||    
T  35954866 tttttcgatttgattcggtttaaatttttggttacgtcgattttgtttgaaccgcttacatcccta 35954931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 33036987 - 33037116
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    ||||| ||| ||||||||| ||||| ||||||||||||| |||||| | |||||||||||| |||        ||||| || ||||| |||||||  |||    
T  33036987 catagatgtgtgtgaggagggataatattactaaaatggagagtgaagttagcatcgattcagtt--------ctttgaatttcaaatttaaaaatcaag 33037078  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggtt 148  Q
    ||||||||||||||| ||| ||||| ||||||||||||    
T  33037079 aaccgaaccaaactaaatcggtttaagttggttcggtt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 4638313 - 4638207
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    |||||||||||| |||||| | ||||| |||||||||| |||||| | | ||||||||| |||||||  ||||||||| || || |||||||| ||| ||    
T  4638313 ggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaaccgaaccgaacaaggtcggatattttttc 4638214  T
Q  188 ggtttgg 194  Q
    |||||||    
T  4638213 ggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 13852296 - 13852449
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    |||||||||||| |||||||| ||||| |||||||||| ||| |||| | |||||| || ||| |||  ||||||| | || |||||| |||| ||| |     
T  13852296 ggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaaacaaagtcagatattttttt 13852395  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    | |||| ||| |||||   |||||||||| | |||||||||||||| |||||||    
T  13852396 gatttgattcaatttggactttcgatttcgttggttttgtccgaactacttaca 13852449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 31111572 - 31111411
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    |||||||||||| |||||| | ||||| |||||||||| ||| ||||   ||||||| | ||  |||  ||||||||| || || |||||||| ||| ||    
T  31111572 ggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaaacaaggtcggatattttttc 31111473  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaat 249  Q
    |||||||||| |||||  |||||| |||| | | |||||||  ||||||||||| |||||||    
T  31111472 ggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacacccctaat 31111411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 35961755 - 35961922
Alignment:
Q  80 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggat 179  Q
    |||||||| ||||||||||| ||||||| ||||||||| |||| || |||  || ||||||||||  ||||||||| |||| |||  || || || | ||    
T  35961755 ggttctttagatctcaaaatcaaaaactgagaaccgaatcaaattagatcgattaaggttggttcaattcgattttgaaccaaacaaaacaaggtagaat 35961854  T
Q  180 actttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    ||||| ||  ||||||||  ||| | |||||  || ||||| ||||||| ||||| ||||||||||||    
T  35961855 actttttcaatttggttcggtttaaattttcagttacatcgattttgtctgaaccgcttacatcccta 35961922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 44018966 - 44019029
Alignment:
Q  85 tttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 148  Q
    |||||||||||||||||||| |  ||||||||||||||||| ||| ||||| ||||||||||||    
T  44018966 tttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagttggttcggtt 44019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 3690109 - 3690179
Alignment:
Q  78 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 148  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||| ||| ||||||||||||| ||||    
T  3690109 tcggttcattagatctcaaaattaaaaatcgagaaccgaaccaaactagatcggtttaggttggtttggtt 3690179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 12893947 - 12894099
Alignment:
Q  95 aaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 194  Q
    ||||||||||||| ||||| ||||||||  |  || |||||| |||||||||||   |||| ||||||||| || || ||||||||| || | |||||||    
T  12893947 aaaattaaaaactgagaactgaaccaaagaagttcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttgg 12894046  T
Q  195 ttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    |||  ||||   ||| |||||| | ||||||||| |||||||| ||| |||||    
T  12894047 ttcagtttggacttttgatttcgttggttttgtctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 3767611 - 3767826
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| |||||| || ||||| |||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||||||||| ||||||  ||||||     
T  3767611 gtgtgtgtgagaagggataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaacca 3767710  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||||||| ||| |||||| ||||||||||||| |||| ||||||||  || || |||||||||||| |||||||||           |||||| |||    
T  3767711 aaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcggtttgg----------attttcggttt 3767800  T
Q  216 catcggttttgtccgaaccacttaca 241  Q
    ||||||||||||||||||||||||||    
T  3767801 catcggttttgtccgaaccacttaca 3767826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 9505247 - 9505013
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||||||  ||||| |||||||||||||||||||||| | |||||| |||||||| ||||||  |||||| |||||||||||| |  |||||||    
T  9505247 gtgtgtgtgaggaaggataatattactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatcctagaaccg 9505148  T
Q  116 aaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata-ctttctcggtttggttccatttgagttttcgatt 214  Q
    |||||||||||||| |||| |||||||||||||||||||| || |||||| || || || |||||  ||| ||| |||||||   ||||  |||||| ||    
T  9505147 aaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattttcggtt 9505048  T
Q  215 tcatcggttttgtccgaaccacttacatccctaat 249  Q
    ||||||||||| ||| ||||||||||| |||||||    
T  9505047 tcatcggttttatccaaaccacttacacccctaat 9505013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 16570822 - 16571048
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| | |||||||||||||||||| | |||||||| ||| |||  ||||||||||||||||||||||||||||   |||||| |||||    
T  16570822 tgtgaggagggataataatactaaaatggggagtgaagttagcatcggttcagttcatcggttctttggatctcaaaattaaaaatcgagaacctaacca 16570921  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcg 220  Q
    || || ||| ||||||||||||| |||||| |||| |||| |||| || || || ||||| ||| | ||||||||||  ||||| |||| ||||||||||    
T  16570922 aattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggata-ttttttggtttggttcggtttgaatttttgatttcatcg 16571020  T
Q  221 gttttgtccgaaccacttacatccctaa 248  Q
    ||||||||| ||||| ||||| ||||||    
T  16571021 gttttgtccaaaccaattacacccctaa 16571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 32322035 - 32321799
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||| ||||| ||||||||||||| |||||||| |||||| | || ||||| ||||||| ||| |||| ||||||||||||  ||    
T  32322035 cataagtgtgtgtgaggagagataatattactaaaatggagagtgaggttagcattggtttggtttatcggttcattgaatcttaaaattaaaaaccgag 32321936  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 210  Q
    |||||||||||| || ||| ||||| |||| ||||||| | |||| ||||||||| || || |||| ||||||| |||||||| ||   |||  ||||||    
T  32321935 aaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggttttc 32321836  T
Q  211 gatttcatcggttttgtccgaaccacttacatcccta 247  Q
    | ||||||| ||||| |||||||||||| || |||||    
T  32321835 ggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 34760833 - 34760910
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    |||||||||||| |||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaacc 34760910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 9040648 - 9040511
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||| ||||| | || ||||||||| |||| || ||||||| | ||||||  ||||||  || ||||||||||| ||||||  ||    
T  9040648 cataagtgtgtgtgaggagggataataatagtaaaatgggaagtggggttagcatcaactcggttcatcggtttcttagatctcaaaatgaaaaaccgag 9040549  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggtt 148  Q
    |||| |||||||| | ||| |||||| |||||||||||    
T  9040548 aaccaaaccaaacaagatcggtttagattggttcggtt 9040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 25456082 - 25456265
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||| ||| ||||| | || ||||||||||||||||| |||||||  |||| ||  ||||||  |||||||||||||| ||||||  |     
T  25456082 cataagtgtgtgtgaagagggataataatagtaaaatggggagtgaggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgat 25456181  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 194  Q
    |||| |||||||| | ||  |||||| ||| ||||||||| |||| ||| |||||  | || ||||||||| ||  ||||||||    
T  25456182 aaccaaaccaaacaagattggtttagattgattcggttcggttttgaactgaaccagacaaggtcggatacatttccggtttgg 25456265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 40434962 - 40435089
Alignment:
Q  70 tcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaat 169  Q
    ||||||| |||||||||||||||| ||||| ||||| | |||||||| ||||| || ||  |||||  || ||| ||||||||||| |||  |||   |     
T  40434962 tcggtttatcggttctttggatctaaaaataaaaaattgagaaccgagccaaaataaattggtttacatttgtttggttcgattttgaactcaactagac 40435061  T
Q  170 aaagtcggatactttctcggtttggttc 197  Q
    |||||||||||||||||| |||||||||    
T  40435062 aaagtcggatactttctcagtttggttc 40435089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 37379993 - 37380119
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||| |||||||| ||||| || || ||| | |||||||   | |||| || ||||||||||| ||||||| |||||||||  |    
T  37379993 tgtgaggagtgataatattagtaaaatggagagtggggttaccattggttcggttcacccgttcgttagatctcaaaatgaaaaactgagaaccgaaata 37380092  T
Q  121 aactatatcagtttaggttggttcggt 147  Q
    ||  || ||||||||| ||||||||||    
T  37380093 aataatgtcagtttagattggttcggt 37380119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 35948987 - 35948827
Alignment:
Q  87 tggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttct 186  Q
    |||||||| |||| |||||| | ||| | |||||||||| |||  ||| |  || ||||| ||| |||  ||||||||| || ||||||||||| ||| |    
T  35948987 tggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaaccgaaccaaacaaagtcggatatttttt 35948888  T
Q  187 cggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
     | |||||||| |||||   ||||| |||| | ||||||||||||| |||||||| |||||    
T  35948887 tgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 3555435 - 3555482
Alignment:
Q  78 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaacta 125  Q
    ||||||||||| || ||||||||||||| |||||||| ||||||||||    
T  3555435 tcggttctttgaatttcaaaattaaaaattaagaaccaaaccaaacta 3555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 20860457 - 20860498
Alignment:
Q  200 tttgagttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    ||||| |||||| ||||||||||||||| |||||||||||||    
T  20860457 tttgaattttcggtttcatcggttttgttcgaaccacttaca 20860498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 25808235 - 25808368
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||| ||| ||||| | || ||||||| ||||||||| |||||||| |||| ||  ||| ||  |||||||||||||| ||||||  ||    
T  25808235 cataagtgtgtgtgaagagggataataatattaaaatgaggagtgaggttagcatcggttcgattcatcgatttcttggatctcaaaatgaaaaaccgag 25808334  T
Q  111 aaccgaaccaaactatatcagtttaggttggttc 144  Q
    || | |||||||  | ||| |||||| |||||||    
T  25808335 aatcaaaccaaaaaagatcggtttagattggttc 25808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 513131 - 512950
Alignment:
Q  69 ttcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaa 168  Q
    |||||||| ||||||  |||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||| | |||| ||||||||| ||    
T  513131 ttcggtttatcggtttattggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaa 513032  T
Q  169 taaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaatt 250  Q
     ||  | ||||||||| |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||| | ||||||    
T  513031 caagattggatactttttcggtttggttcgatttgggtttttgatttcatcagttttgtccgaaccacttacacctctaatt 512950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 248
Target Start/End: Original strand, 8414579 - 8414765
Alignment:
Q  62 gcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccg 161  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||  ||||  ||||||||||| ||  ||||| ||   ||||||||  |||| ||||     
T  8414579 gcatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaacca 8414678  T
Q  162 aacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaa 248  Q
    |||| || || |||||||||||| ||||||| ||||  ||||  |||||  ||||||||||||||||||||||||||||||||||||    
T  8414679 aaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccacttacatccctaa 8414765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 11911810 - 11911590
Alignment:
Q  22 gtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaa 121  Q
    |||| ||| ||||| |||||| ||||||||||||||  ||| |||| || ||||  ||||||| | |||| |||||||||||||| ||||||  || |||    
T  11911810 gtgatgagggataatattactcaaatggggagtgagtttagtatcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaa 11911711  T
Q  122 actatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatac-tttctcggtttggttccatttgagttttcgatttcatcg 220  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||| || || ||||||||| ||| |||  ||||||   |||  ||||| | ||||||||    
T  11911710 actagatcggtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcggatacttttttcgaattggtttggtttatgtttttggtttcatcg 11911611  T
Q  221 gttttgtccgaaccacttaca 241  Q
    |||| |||| |||||||||||    
T  11911610 gtttggtccaaaccacttaca 11911590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 27320483 - 27320644
Alignment:
Q  80 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggat 179  Q
    ||||| |||||||||| ||||||||||  | ||||||||||||||| |||  || | |||||||||||| |||||| ||||||||| || || |||||||    
T  27320483 ggttcattggatctcataattaaaaaccgaaaaccgaaccaaactagatcttttaatgttggttcggtttgattttgaaccgaaccaaacaaggtcggat 27320582  T
Q  180 actttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    ||||| | | |||| |||  |||   |||||| |||||||||||| |||| |||||||||||    
T  27320583 acttttttgatttgattcagtttagattttcggtttcatcggtttcgtccaaaccacttaca 27320644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 17530820 - 17530691
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| ||||||||||||| |||||| | |||||||| || ||||| | |||||||||||| ||||||  |||| |  |||||||||||||| ||||||     
T  17530820 gataatattactaaaatggagagtgaagttagcatcggtttggtttattggttctttggatatcaaaaaaaaaatcggagaaccgaaccaaattatatcg 17530721  T
Q  131 gtttaggttggttcggttcgatttttaacc 160  Q
    ||||  |||||||||||||| |||| ||||    
T  17530720 gttttagttggttcggttcggttttaaacc 17530691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 32678426 - 32678518
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaac 123  Q
    ||||| |||||||||||||||||||||| |||||||  |||| ||  ||||||| |||||||||||||||||||||  |||||||| ||||||    
T  32678426 gataatattactaaaatggggagtgaggttagcatcagttcgattcatcggttcattggatctcaaaattaaaaaccgagaaccgagccaaac 32678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 16584891 - 16585050
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    ||||||| |||| |||||| | ||||| |||||||||| ||| || | | ||||||||| ||| |||  ||||||||| || || || ||||| ||| ||    
T  16584891 ggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatattttttc 16584990  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    | ||||||||  ||||   ||||| |||| | |||||||||||||||||||||| |||||    
T  16584991 gttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 25785910 - 25785805
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    ||||||| |||| |||||| | ||||| |||||||||||||| |||| | ||||||||| ||| |||  ||||||||| || || |||||||| ||| ||    
T  25785910 ggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattttttc 25785811  T
Q  188 ggtttg 193  Q
    ||||||    
T  25785810 ggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 32678532 - 32678600
Alignment:
Q  173 gtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttaca 241  Q
    |||||||| ||| |||| || ||||  ||||| |||||||||||||||||||||| |||||||||||||    
T  32678532 gtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttaca 32678600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 4407741 - 4407951
Alignment:
Q  32 ataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcag 131  Q
    |||| |||| ||||||||| ||||  | || ||||| || ||||| || |||  |||||||||||||| ||||| | |||| |||||||||| | ||  |    
T  4407741 ataatattagtaaaatgggaagtggagttaacatcggtttggtttatcagtttcttggatctcaaaatgaaaaaatgagaatcgaaccaaacaagatatg 4407840  T
Q  132 tttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccga 231  Q
    ||||| || || ||||||| |||| |||||||||  | || |||| ||||||| ||| ||||||   |||| |  ||| | |||| |||||||||||| |    
T  4407841 tttagattagtccggttcggttttgaaccgaaccagacaatgtcgaatactttttcgatttggtctgatttaaacttttggtttcgtcggttttgtccaa 4407940  T
Q  232 accacttacat 242  Q
    ||| |||||||    
T  4407941 accgcttacat 4407951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 44581820 - 44581885
Alignment:
Q  78 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggtt 143  Q
    |||||| ||||||||||||||| |||||  |||||||||| ||||||| || ||||||||| ||||    
T  44581820 tcggttatttggatctcaaaataaaaaatcaagaaccgaatcaaactagattagtttaggtcggtt 44581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 33857634 - 33857598
Alignment:
Q  214 ttcatcggttttgtccgaaccacttacatccctaatt 250  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  33857634 ttcattggttttgtccgaaccacttacacccctaatt 33857598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 33923289 - 33923325
Alignment:
Q  214 ttcatcggttttgtccgaaccacttacatccctaatt 250  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  33923289 ttcattggttttgtccgaaccacttacacccctaatt 33923325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 48070850 - 48070613
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||| ||| ||||  |||||| |||||| |||||||| || ||||| ||| |||| |||||||||||||||||||||||||||||  ||    
T  48070850 cataagtgtgtgtgaagagggatattattactgaaatggtgagtgaggttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgag 48070751  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 210  Q
    ||||||| ||||||| ||| ||||||||| |||||||||| |||| |||| || | || || |||||||| ||| | ||||| ||||  |||   |||||    
T  48070750 aaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttggtttagttcggtttagattttc 48070651  T
Q  211 gatttcatcggttttgtccgaaccacttacatccctaa 248  Q
    | ||| |||| |||||||||||||||||||| ||||||    
T  48070650 ggtttgatcgattttgtccgaaccacttacacccctaa 48070613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 12471704 - 12471913
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| |||||||||||| ||||||||| || ||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||||| |||||| |||     
T  12471704 gataatattactaaaatgaggagtgaggttaacatcgattcagttcatcgattctttgaatctcaaaattaaaaactaagaaccgaactaaactagatcg 12471803  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccg 230  Q
     |||| |||||||||||||| |||| ||| ||||| |||||  |  ||||| || || |||| ||||  ||||  ||||| |||||||||||||| ||||    
T  12471804 atttaagttggttcggttcggttttgaacagaacc-aataagatgagatacgttttcagttttgttcggtttggattttcaatttcatcggttttatccg 12471902  T
Q  231 aaccacttaca 241  Q
    |||||||||||    
T  12471903 aaccacttaca 12471913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 12470979 - 12471189
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| |||||||||||||||||||||  || ||||||||  |||  |||||| ||||||||||||||||||||||| |||||||||| |||||| | |     
T  12470979 gataatattactaaaatggggagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaactagaccg 12471078  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccg 230  Q
     |||||||||||| ||||||||||| ||| ||||| || |   || |||||||| || |||| ||||  ||||| || ||| ||||||||||||| |||     
T  12471079 atttaggttggttaggttcgattttgaactgaaccaaacaggatcagatactttttcagttttgttcggtttgaattctcggtttcatcggttttatcca 12471178  T
Q  231 aaccacttaca 241  Q
    |||||||||||    
T  12471179 aaccacttaca 12471189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 44523622 - 44523775
Alignment:
Q  11 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 110  Q
    |||| |||| ||||||||||||||| ||||||||||||| |||||||| ||  |||||||| |||| ||| |||||||| |||||||||||||||   ||    
T  44523622 cataagtgtgtgtgaggagcgataatattactaaaatggagagtgaggttaatatcgattcagtttatcgtttctttgg-tctcaaaattaaaaatcgag 44523720  T
Q  111 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    |||||||||||| |||||  |||||||||||||||||| |||||| |||||||||    
T  44523721 aaccgaaccaaattatattggtttaggttggttcggtttgattttgaaccgaacc 44523775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 12470183 - 12470325
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||| ||| ||||| |||||||||||||||| ||||  ||||||| |||  |||  |||||||||||||||||||||||| ||||||||||| ||||||    
T  12470183 tgtgaagagggataatattactaaaatggggactgagattagcatcaatttagttcatcggttctttggatctcaaaattagaaactaagaacggaacca 12470282  T
Q  121 aactatatcagtttaggttggttcggttcgatttttaaccgaa 163  Q
    ||||| ||  ||||||||||| |||||| ||||||||||||||    
T  12470283 aactagattggtttaggttggctcggtttgatttttaaccgaa 12470325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 25545177 - 25545387
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| |||||||||||||||||||||| |||||| | |||| ||  | |||||||||||| | ||||||||||  | |||||| |||||||||| |||     
T  25545177 gataatattactaaaatggggagtgaggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactagatcg 25545276  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccg 230  Q
    |||||||||||||  ||||| |||| ||||||||| |  || |||| ||||||| |  |||| | ||  ||||| |||||||||| |||| ||||||| |    
T  25545277 gtttaggttggtttagttcggttttgaaccgaaccaatcaaggtcgaatacttttttagttttgctcggtttgaattttcgattttatcgattttgtctg 25545376  T
Q  231 aaccacttaca 241  Q
    |||||||||||    
T  25545377 aaccacttaca 25545387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 31136356 - 31136196
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| ||||||| ||||  |||||||  |||||||| |||||||  ||||||||||||||||| |||||  |||| ||||||| ||||||| |||||      
T  31136356 gataatattactataatgatgagtgagtttagcatcggttcggttcatcggttctttggatctcgaaatttgaaaccaagaaccaaaccaaattatattg 31136257  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggtt 196  Q
    ||||||||||||||||||     || ||||||| | || || |||||||||||| |||||||||||    
T  31136256 gtttaggttggttcggtt-----ttgaaccgaatcaaacaaggtcggatactttttcggtttggtt 31136196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 3996962 - 3997130
Alignment:
Q  80 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggat 179  Q
    ||||| |||||||||||||| |||| | | |||||||||||||| |  |  |||||| |||||| |||||| |||| |||| |||| || ||||||||||    
T  3996962 ggttccttggatctcaaaatgaaaaccga-gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggat 3997060  T
Q  180 actttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaat 249  Q
     |||  |||||||||| |  ||||   ||||| |||||| |||||||||||||||||||||| |||||||    
T  3997061 tcttcttcggtttggtacggtttggactttcggtttcattggttttgtccgaaccacttacacccctaat 3997130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 12013027 - 12013113
Alignment:
Q  157 aaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatc 243  Q
    ||||||||| ||||| |||||||||||| |||||| ||||| |||| | |||||||||||||||||||| | | |||||||||||||    
T  12013027 aaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccacttacatc 12013113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 21378567 - 21378657
Alignment:
Q  64 atcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttt 155  Q
    ||||||||||||  ||||||||||| |||||||||| ||||||| |||||||||||||||||  ||| ||| ||||| ||||||||| ||||    
T  21378567 atcgattcggttcatcggttctttgaatctcaaaat-aaaaactgagaaccgaaccaaactaggtcaatttcggttgattcggttcggtttt 21378657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 7352396 - 7352556
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    ||||||| |||| |||||| | ||||| |||||||||| | | |||| | ||||||||| ||| |||  |||| |||| |||||||||||||| ||| ||    
T  7352396 ggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaaccaaaccaaataaagtcggatattttttc 7352495  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaa 248  Q
    |||| ||||  |||||   ||||| |||| | ||||||||| |||||| ||||| ||||||    
T  7352496 ggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacacccctaa 7352556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 27226920 - 27227091
Alignment:
Q  78 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcgg 177  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||| |  || |||||| |||||||||||||  ||| | || ||||  | ||  | ||    
T  27226920 tcggttccttagatcttaaaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatggg 27227019  T
Q  178 atactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaat 249  Q
    |||| || |  ||||| |||  ||||   ||| ||||||||||||||||||||||| ||||||| |||||||    
T  27227020 ataccttttaagtttgtttcggtttggacttttgatttcatcggttttgtccgaacaacttacacccctaat 27227091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 35738093 - 35738195
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||| ||| ||||| |||| |||||||||||||| || ||  |||  || ||||  ||||||| |||||||||||||| ||||||| ||||||||||||    
T  35738093 tgtgatgagggataatattagtaaaatggggagtggggttacaatcagtttggttgatcggttccttggatctcaaaatgaaaaactgagaaccgaacca 35738192  T
Q  121 aac 123  Q
    |||    
T  35738193 aac 35738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 46265328 - 46265439
Alignment:
Q  86 ttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttc 185  Q
    |||||||||||||| | ||||| | |||| |||||||| | ||| |||||| ||| ||||||||| |||| |||||||||  | || ||||||||| ||     
T  46265328 ttggatctcaaaatgacaaactgaaaaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacattt 46265427  T
Q  186 tcggtttggttc 197  Q
    | ||||||||||    
T  46265428 ttggtttggttc 46265439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 22331994 - 22332100
Alignment:
Q  78 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcgg 177  Q
    |||||||||||||||||||||||||||||  | || ||||| |||||| |||  ||||||| |||| |||| | |||  ||||||||| || || || ||    
T  22331994 tcggttctttggatctcaaaattaaaaaccgaaaatcgaacaaaactagatcgatttaggtcggtttggtttggtttcaaaccgaaccaaaaaaggtggg 22332093  T
Q  178 atacttt 184  Q
    |||||||    
T  22332094 atacttt 22332100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 2197640 - 2197732
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaac 123  Q
    ||||| |||| ||||||||||||||| | |||||||| || ||||  ||||||  |||||||||||||| ||||||  |||||| || |||||    
T  2197640 gataatattagtaaaatggggagtgaagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaaaccgagaacccaatcaaac 2197732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 12012904 - 12013022
Alignment:
Q  25 aggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaatt---aaaaactaagaaccgaaccaa 121  Q
    ||||| |||||  ||||||||||| || |||||| ||||| || |||||||| |||||||||||||| | ||||||   ||||||| ||||  |||||||    
T  12012904 aggagggataatcttactaaaatgaggggtgaggttagcaccggttcggtttatcggttctttggattttaaaattaaaaaaaactgagaagtgaaccaa 12013003  T
Q  122 actatatcagtttaggttg 140  Q
     ||| ||  ||||||||||    
T  12013004 tctagattggtttaggttg 12013022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 2923114 - 2923035
Alignment:
Q  86 ttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    |||||||||||||| |||||  |||||||||| ||||| |  || || ||| ||||||||||||| |||| |||||||||    
T  2923114 ttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaacc 2923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 45595546 - 45595452
Alignment:
Q  32 ataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactat 126  Q
    |||| |||||||||||||||||||| | |||||||  |||| ||| |||| | |||| |||||||||||| ||    |||||| |||||||||||    
T  45595546 ataatattactaaaatggggagtgatgttagcatcagttcgatttatcggatatttgaatctcaaaattagaattcgagaaccaaaccaaactat 45595452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 39695233 - 39695149
Alignment:
Q  96 aaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata 180  Q
    |||| |||||| | ||||| ||||||||||||||||||| | ||||||| | ||| |||  ||||||||| || || ||||||||    
T  39695233 aaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaaccgaaccaaacaaggtcggata 39695149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 1498164 - 1498365
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatca 130  Q
    ||||| |||||||||||||||||| | | |||||||| |||||||  ||||||  |||||||||||||| ||| ||| |||||| |||  ||||| |||     
T  1498164 gataatattactaaaatggggagtcatgttagcatcggttcggttcatcggtttattggatctcaaaataaaatactgagaaccaaacttaactacatcg 1498263  T
Q  131 gtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccg 230  Q
    |||||||||||||| ||||| |||| ||||||||| || || |||||||| |||||| ||||| |||  ||||  |||||| ||||||||||||||||||    
T  1498264 gtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggattttcggtttcatcggttttgtccg 1498363  T
Q  231 aa 232  Q
    ||    
T  1498364 aa 1498365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 7239239 - 7239442
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||| |||| ||| |||| |||| |||||| ||||| ||||||||||||||||||||    
T  7239239 tgtgaggagagataatattactaaaatgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaacca 7239338  T
Q  121 aactatatcagtttaggttggttcggttcgatttt-----taaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||  ||  |||| |||||||||||||| ||||      |||| |||||||||| |||||||||||| || |||||||||  ||||| |||| | |||    
T  7239339 aactaactcgatttaagttggttcggttcggttttgaaccaaaccaaacctaataaggtcggatactttttcagtttggttcgttttgaatttttggttt 7239438  T
Q  216 catc 219  Q
    ||||    
T  7239439 catc 7239442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 7244415 - 7244618
Alignment:
Q  21 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 120  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||| |||| ||| |||| |||| |||||| ||||| ||||||||||||||||||||    
T  7244415 tgtgaggagagataatattactaaaatgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaacca 7244514  T
Q  121 aactatatcagtttaggttggttcggttcgatttt-----taaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgattt 215  Q
    |||||  ||  |||| |||||||||||||| ||||      |||| |||||||||| |||||||||||| || |||||||||  ||||| |||| | |||    
T  7244515 aactaactcgatttaagttggttcggttcggttttgaaccaaaccaaacctaataaggtcggatactttttcagtttggttcgttttgaatttttggttt 7244614  T
Q  216 catc 219  Q
    ||||    
T  7244615 catc 7244618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 29126269 - 29126087
Alignment:
Q  61 agcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaacc 160  Q
    ||||||| |||||||  | |||| ||||||| ||||||| ||||| | |||||| ||| |||||| | | |||||||||||||  ||||| |||  |||     
T  29126269 agcatcggttcggttcattggttttttggatatcaaaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaact 29126170  T
Q  161 gaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatc 243  Q
    || || || ||| ||||||||||| ||||||||||||  ||| | || || ||||| | ||||||||||||||||||||||||    
T  29126169 gacccaaacaaaatcggatactttttcggtttggttcggtttaaattctccatttcgttggttttgtccgaaccacttacatc 29126087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 31896033 - 31895891
Alignment:
Q  110 gaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagtttt 209  Q
    ||||| |||||||||| ||| |||| | ||||||| | ||| |||  ||||||||| || || |||||||| ||| ||||||||||||  ||||   |||    
T  31896033 gaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggtcggatattttttcggtttggttcagtttggacttt 31895934  T
Q  210 cgatttcatcggttttgtccgaaccacttacatccctaattat 252  Q
    ||||||  | |||||||||||||||||||||| ||||||||||    
T  31895933 cgattttgttggttttgtccgaaccacttacacccctaattat 31895891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 16746567 - 16746726
Alignment:
Q  88 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 187  Q
    ||||||| |||| |||||| | ||| | |||||||||| ||| |||| | |||||| || ||| |||  ||||||||| || || || ||||| ||| ||    
T  16746567 ggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaacaaggttggatattttttc 16746666  T
Q  188 ggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatcccta 247  Q
    | ||||||||  |||    ||||| |||| | ||||||||||||||||||||||||||||    
T  16746667 gatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatcccta 16746726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 17770421 - 17770213
Alignment:
Q  37 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 136  Q
    |||| ||||||||| |||| || |||||||| || ||||  ||  |||||||||||||||| |||||||| ||||||  || | |||||  || ||||||    
T  17770421 attagtaaaatgggaagtg-ggttagcatcggtttggttcatctattctttggatctcaaatttaaaaaccaagaactaaatccaactagttcggtttag 17770323  T
Q  137 gttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccac 236  Q
    |||||||||||||   ||| |||| |||| || ||  | |||||||||  |||||| |||   ||||  |||| | ||||||| |||||||| ||||| |    
T  17770322 gttggttcggttcagctttgaaccaaaccaaaaaagattggatacttttgcggtttagtttggtttggatttttggtttcatcagttttgtctgaaccgc 17770223  T
Q  237 ttacatccct 246  Q
    ||||| ||||    
T  17770222 ttacacccct 17770213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 39786164 - 39786072
Alignment:
Q  31 gataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaac 123  Q
    ||||| |||| |||||||| || |  || |||||||| ||| ||||||||| || |||||||||||| | |||| || |||||||||||||||    
T  39786164 gataatattagtaaaatggagattcgggttagcatcggttcagtttgtcggatccttggatctcaaattgaaaatctgagaaccgaaccaaac 39786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 41092009 - 41092105
Alignment:
Q  69 ttcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 165  Q
    |||||||  ||| ||| |||||||||||| | |||||| |||||| |||||||||  | || |||||| |||||| ||||||||||| | |||||||    
T  41092009 ttcggttcatcgattccttggatctcaaagtaaaaaaccaagaactgaaccaaacagtgtcggtttagattggtttggttcgattttgatccgaacc 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 13951 - 13828
Alignment:
Q  42 taaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttgg 141  Q
    ||||||||||||||||| |||||||| |||| ||  ||||||  |||||||||||||| ||||||  | |||| |||||||  | |||||||||| ||||    
T  13951 taaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcagtttagattgg 13852  T
Q  142 ttcggttcgatttttaaccgaacc 165  Q
    |||||||||||||| ||| |||||    
T  13851 ttcggttcgattttgaactgaacc 13828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 33799 - 33724
Alignment:
Q  177 gatactttctcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaattat 252  Q
    ||||| || |||||||||||| |||||   ||||  |||||| |||||| ||||||||||||||| ||||||||||    
T  33799 gatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacacccctaattat 33724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 248
Target Start/End: Complemental strand, 6472 - 6310
Alignment:
Q  90 atctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaa-ta---aagtcggatactttc 185  Q
    |||||||||||||||||  ||||||  | ||||||| ||| ||||||||||||||| ||| ||||| ||||||||| || ||   | ||||||||||||     
T  6472 atctcaaaattaaaaaccgagaaccagatcaaactagatcggtttaggttggttcgattcaattttaaaccgaaccaaactagctaggtcggatactttt 6373  T
Q  186 tcggtttggttccatttgagttttcgatttcatcggttttgtccgaaccacttacatccctaa 248  Q
    ||||||| ||||  ||||  ||||| |||| |||||||||||||||| |||||| | ||||||    
T  6372 tcggtttagttcagtttggattttcaattttatcggttttgtccgaatcacttatacccctaa 6310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 8398 - 8270
Alignment:
Q  16 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 115  Q
    |||| ||||||||| ||||| ||||| |||||| ||||||||| ||||| |  |||||||  |||| ||||||||||| |||||  ||||   |||||||    
T  8398 gtgtgtgtgaggagggataatattaccaaaatgcggagtgaggttagcaccagttcggttcatcggctctttggatctaaaaatacaaaatcgagaaccg 8299  T
Q  116 aaccaaactatatcagtttaggttggttc 144  Q
    |||||||||| |||  |||||||||||||    
T  8298 aaccaaactagatcgatttaggttggttc 8270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 1873 - 1963
Alignment:
Q  90 atctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata 180  Q
    ||||| ||||||||||| | ||||| ||||||| || |||||||| | ||||||| | |||||||  ||||||||| || || ||||||||    
T  1873 atctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaaccgaaccaaacaaggtcggata 1963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University