View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_22 (Length: 353)
Name: NF4030_low_22
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 83 - 346
Target Start/End: Original strand, 47201579 - 47201848
Alignment:
| Q |
83 |
aacaacattattagtagaacgcaataaaagaggaaccttgttttggtttgtttcaacaacaacagaa------gaagaagttccgtttaatgggtcagat |
176 |
Q |
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| T |
47201579 |
aacaacattattagtagaacgcaataaaagaggaaccttgttttggtttgtttcaacaacaacagaagaagaagaagaagttccgtttaatggatcagat |
47201678 |
T |
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| Q |
177 |
tcagatgacaatatatctaagctacgtgattgatgaacttggaatttacgaggttgaagatatcttctttgagaatatgttatggtggaaacggatgaaa |
276 |
Q |
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| T |
47201679 |
tcagatgacaatatatctaagctacgtgattgatgaacttgaaatttacgaggttgaagatatcttctttgagaatatgttatggtggaaatggatgaaa |
47201778 |
T |
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| Q |
277 |
caccaaaacccatcattgttgaagccatgaacgacaagtgaaaaaagttggctactttgtttcttcttat |
346 |
Q |
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| T |
47201779 |
caccaaaacccatcattgttgaagccatgaacgacaagtgaaaaaagttggctactttgtttcttcttat |
47201848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 47201512 - 47201548
Alignment:
| Q |
16 |
catacccatcatcccaaagtggtgccaacccaacctg |
52 |
Q |
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| T |
47201512 |
catacccatcatcccaaagtggtgccaacccaacctg |
47201548 |
T |
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