View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_24 (Length: 346)
Name: NF4030_low_24
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 45067507 - 45067184
Alignment:
| Q |
17 |
agacatcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067507 |
agacatcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttg |
45067408 |
T |
|
| Q |
117 |
aacacaatgaaatatgttttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067407 |
aacacaatgaaatatgttttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaact |
45067308 |
T |
|
| Q |
217 |
atagagatataattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattga |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067307 |
atagagatattattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattga |
45067208 |
T |
|
| Q |
317 |
aatgagtgcacagaagaataatct |
340 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45067207 |
aatgagtgcacagaagaataatct |
45067184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 45075067 - 45074750
Alignment:
| Q |
17 |
agacatcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttg |
116 |
Q |
| |
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|||| |||| |||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
45075067 |
agacgtcacggcaatcaagacagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttg |
45074968 |
T |
|
| Q |
117 |
aacacaatgaaatatgttttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaact |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| | |
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| T |
45074967 |
gacacaatgaaatatgttttttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaatt |
45074868 |
T |
|
| Q |
217 |
atagagatataattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattga |
316 |
Q |
| |
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|||||||| | | ||| ||||||||||| |||||||| ||||||| |||||||||||||||||||| || || || || ||||||||| ||||||||| |
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| T |
45074867 |
atagagatgttactgccaagaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattga |
45074768 |
T |
|
| Q |
317 |
aatgagtgcacagaagaa |
334 |
Q |
| |
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|||||||||||| ||||| |
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| T |
45074767 |
aatgagtgcacataagaa |
45074750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 45078292 - 45077980
Alignment:
| Q |
22 |
tcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacac |
121 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||| | || || |||||||| || | ||||||||| || ||||||||||||||| ||||||| || |
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| T |
45078292 |
tcacagcaatcaacacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatac |
45078193 |
T |
|
| Q |
122 |
aatgaaatatgttttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactataga |
221 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
45078192 |
aatgaaatatgtgttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattataga |
45078093 |
T |
|
| Q |
222 |
gatataattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatga |
321 |
Q |
| |
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||| | | |||||||||||||| ||||| || ||||||| ||||||||||| |||||||| || || ||||| |||||||||||||||||||||||| |
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| T |
45078092 |
gatgtcaccgctaagaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
45077993 |
T |
|
| Q |
322 |
gtgcacagaagaa |
334 |
Q |
| |
|
||||||| ||||| |
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| T |
45077992 |
gtgcacataagaa |
45077980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 45082593 - 45082276
Alignment:
| Q |
17 |
agacatcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttg |
116 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||| |
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| T |
45082593 |
agacgtcacggcaatcaatacagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttg |
45082494 |
T |
|
| Q |
117 |
aacacaatgaaatatgttttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaact |
216 |
Q |
| |
|
|| ||| |||||||||| |||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| | |
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| T |
45082493 |
aatacattgaaatatgtgttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaatt |
45082394 |
T |
|
| Q |
217 |
atagagatataattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattga |
316 |
Q |
| |
|
|||||||| | | |||||||||||||| ||||| || || |||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||| |
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| T |
45082393 |
atagagatgtcaccgctaagaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattga |
45082294 |
T |
|
| Q |
317 |
aatgagtgcacagaagaa |
334 |
Q |
| |
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|||||||||||| ||||| |
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| T |
45082293 |
aatgagtgcacataagaa |
45082276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 317
Target Start/End: Complemental strand, 34504829 - 34504539
Alignment:
| Q |
30 |
atcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaat---ga |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| || || ||||||||| |||| ||||||||||| || |
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|
| T |
34504829 |
atcaatacagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattga |
34504730 |
T |
|
| Q |
127 |
aatatgttttttggatgacaggggcttata-agtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagata |
225 |
Q |
| |
|
|||||| |||||| |||||||| ||||| || | ||| |||| |||||||||||||||||||||||||||||||||| |||||| | | ||||||| |
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|
| T |
34504729 |
gatatgtgttttggttgacagggtcttatggagac-caccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatg |
34504631 |
T |
|
| Q |
226 |
taattgctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaa |
317 |
Q |
| |
|
| ||||||||||||||||| |||| || |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
34504630 |
ttattgctaagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaa |
34504539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 29765466 - 29765526
Alignment:
| Q |
36 |
acagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatat |
96 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||| | ||||||||||| |||| |
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|
| T |
29765466 |
acagaatcaggtgtcagaatcaaaacagctgttggtagaggagggtatgtgaaggacatat |
29765526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 17584540 - 17584414
Alignment:
| Q |
22 |
tcacagcaatcaacacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacac |
121 |
Q |
| |
|
|||||||||| || ||| |||||||| ||||||||||||| || ||||||||||| ||||||||||| | |||||| || | ||||||||| ||||| || |
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| T |
17584540 |
tcacagcaatgaatacataatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaac |
17584441 |
T |
|
| Q |
122 |
aatgaaatatgttttttggatgacagg |
148 |
Q |
| |
|
|||||||||||| |||||||||||||| |
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|
| T |
17584440 |
aatgaaatatgtgttttggatgacagg |
17584414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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