View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_25 (Length: 344)
Name: NF4030_low_25
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 26034908 - 26034586
Alignment:
| Q |
9 |
acttcagaagatatagtatcaacttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtctgagttttcag |
108 |
Q |
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| T |
26034908 |
acttcagaagatataggatcaacttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtctgagttctcag |
26034809 |
T |
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| Q |
109 |
gtgagctagccatatttccttctatagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagagaaattaagaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26034808 |
ttgagctagccatatttccttctatagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagagaaattaagaa |
26034709 |
T |
|
| Q |
209 |
ataatgaatcaaaacattatcaaggatcaatgccnnnnnnngttgttaattttaaattgacacgtgccagtgttccgaattatgaggatgttatagcttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26034708 |
ataatgaatcaaaacattatcaaggatcaatgccaaaaaaagttgttaattttaaattgacacgtgctagtgttccgaattatgaggatgttatagcttt |
26034609 |
T |
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| Q |
309 |
cttgttctcaaacttgccgatat |
331 |
Q |
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||||||||||||||||||||||| |
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| T |
26034608 |
cttgttctcaaacttgccgatat |
26034586 |
T |
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