View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_27 (Length: 335)
Name: NF4030_low_27
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 162 - 317
Target Start/End: Original strand, 20221688 - 20221843
Alignment:
| Q |
162 |
atattttgacaaatctcactaggtggtggtccaagttcccatagagatgtagaacgaggaggttccgtaatttatccccatcaaagaatggagaagaaaa |
261 |
Q |
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| T |
20221688 |
atattttgataaatctcactaggtggtggtccaagttcccataaagatgtagaacgaggaggttccgtaatttatccccatcaaagaatggagaagaaaa |
20221787 |
T |
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| Q |
262 |
catgtgtttatatttgattgttcttaaacatcctatagattgaactacataatttc |
317 |
Q |
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| T |
20221788 |
catgtgtttatatttgattgttcttaaacatcctatagattgaactacataatttc |
20221843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 20212034 - 20212167
Alignment:
| Q |
18 |
agactattttatctaaggataaatataaatttagtacaaacattttagaaatcgatgnnnnnnnacaagcctaatgcaatcatgtttggatgcaacaatc |
117 |
Q |
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| T |
20212034 |
agactattttatctaaggataaagataaatttagtacaaacattctagaaaacgatgtttttttacaagcctaatgcaatcatgtttggatgcaactaac |
20212133 |
T |
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| Q |
118 |
aaggataaagataaatgtattaaaatttttgttt |
151 |
Q |
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| T |
20212134 |
gaggataaagataaatgtattataaattttgttt |
20212167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 11932265 - 11932343
Alignment:
| Q |
144 |
ttttgtttctttattcatatattttgacaaatctcactaggtggtggtccaagttcccatagagatgtagaacgaggag |
222 |
Q |
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| T |
11932265 |
ttttgcttgtttattcatatatttcgaccaatatgtcagggtggtggtccaagttcccatagagaagtagaatgaggag |
11932343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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