View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_28 (Length: 325)
Name: NF4030_low_28
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 332053 - 331751
Alignment:
| Q |
9 |
acatcatcatgatcagcttcaagtttgggattgctgctgcaccctccatgtctgtttatgcaggaggtaatagtacgaggaagtggactttcttctctaa |
108 |
Q |
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| T |
332053 |
acatcttcatgatcagcttcaagtttgggattgctgctgcaccctccatgtctgtttatgcaggaggtaatagtacgaggaagtggactttcttctctaa |
331954 |
T |
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| Q |
109 |
ctgagggtaatactatgttgtaaaattcatgctcttgagctgttaggtcattgttgcatactgctgacattctcatcaagtcttgtggatttccattttg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
331953 |
ctgagggtaatactatgttgtaaaattcatgctcttgagctgttaggtccttgttgcatactgctgacattctcatcaagtcttgtggatttccattttg |
331854 |
T |
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| Q |
209 |
ccttgtttctgatcaaatacaaaaccagaaatcattgattatttgacatgaatcatatataacgtactaatgcaaaccaactaacctgcttcaagatttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
331853 |
ccttgtttctgatcaaatacaaaaccagaaatcattgattatttgacatgaatcatatataacgtactaatgaaaaccaactaacctgcttcaagatttt |
331754 |
T |
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| Q |
309 |
cct |
311 |
Q |
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||| |
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| T |
331753 |
cct |
331751 |
T |
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