View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_3 (Length: 724)
Name: NF4030_low_3
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 15357622 - 15357195
Alignment:
| Q |
9 |
agcagagagtggagatgtggtcccaacaccttgtctcaccgacgacatggtgtacatcatgaaagaacgagatttggattagggatggagggaagtggcg |
108 |
Q |
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| T |
15357622 |
agcaaagagtggagatgtggtcccaacaccttgtctcaccgacgacatggtgtacatcatgaaagaacgagatttggattagggatggagggaagtggcg |
15357523 |
T |
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| Q |
109 |
gacgagagtgtgtgtagatttatcataaaagggaagaaccgtataattcaaccataaaccatctttcttgtgaggagagtaaaatttttctctattatat |
208 |
Q |
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| T |
15357522 |
gatgagagtgtgtgtagatttatcataaaagggaagaaccgtataattcaaccataaaccatctttcttgtgaggagagtaaaatttttctctattatat |
15357423 |
T |
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| Q |
209 |
tttgcgtaaatggtataaagtgagtatatatggttattattttgcgtaaatgaaatttttctctattatatttttcttgtgatgagagtgtgttgtacat |
308 |
Q |
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| T |
15357422 |
tttgcgtaaatggtataaagtgagtatatatggttattattttgcgtaaatgaaatttttctctattatatttttcttgtgatgagagtgtgttgtacat |
15357323 |
T |
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| Q |
309 |
tttttatggtataaag-gagtatatattttatattacagagaaaggtattgaaatttagtatcttac-------aaaaatataatttactcaaatatatt |
400 |
Q |
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| T |
15357322 |
tttttatggtataaagtgagtatatattttacattatagagaaaggtattgaaatttagtatcttacaaaggagaaaaatataatttactcaaatatatt |
15357223 |
T |
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| Q |
401 |
attatgtctccacccgctcgatttagtt |
428 |
Q |
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| T |
15357222 |
attatgtctccacccgctagatttagtt |
15357195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 491 - 707
Target Start/End: Complemental strand, 15357132 - 15356917
Alignment:
| Q |
491 |
tatcacacgttgaaataagattgacaatacatgtaaacatttatatgcataattgnnnnnnnactgattaaatttttatgcataattgttaaacccttnn |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
15357132 |
tatcacacgttgaaataagattgacaatacatgtaaacatttatatgcataattgtttttttactaattaagtttttatgcataattgttaaacccttaa |
15357033 |
T |
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| Q |
591 |
nnnnntcatttgtaacaaccgattaannnnnnnnaaagaacaaccgattaatttttatggaccgatatgataattgttttacgtatatctaattaaatta |
690 |
Q |
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| T |
15357032 |
aaaaatcatttgtaacaaccgattaacttttta-aaagaacaaccaattaatttttatggaccgatatgataattgttttacgtatatctaattaaatta |
15356934 |
T |
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| Q |
691 |
catcatgataccatttt |
707 |
Q |
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| T |
15356933 |
catcatgataccatttt |
15356917 |
T |
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