View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_34 (Length: 288)
Name: NF4030_low_34
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25099075 - 25099236
Alignment:
| Q |
1 |
ctgattgcacatcaggaaaagatgaacgcatgattcaattgattcacacgact-gacacaaagttgcgcttcattatgaataactccccgaaagagccgc |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25099075 |
ctgatagcacatcaggaaaagatgaacgcatgattcaattgattcacacctcttgacacaaagttgcgcttcattatgaataactccccgaaagagccgc |
25099174 |
T |
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| Q |
100 |
caagcgaaaaccgaggccttctaaaaatgttatattattggtaataataaacataattatta |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25099175 |
caagcgaaaaccgaggccttctaaaaatgttatattattggtaataataaacataattatta |
25099236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25158165 - 25158326
Alignment:
| Q |
1 |
ctgattgcacatcaggaaaagatgaacgcatgattcaattgattcacacgact-gacacaaagttgcgcttcattatgaataactccccgaaagagccgc |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25158165 |
ctgatagcacatcaggaaaagatgaacgcatgattcaattgattcacacctcttgacacaaagttgcgcttcattatgaataactccccgaaagagccgc |
25158264 |
T |
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| Q |
100 |
caagcgaaaaccgaggccttctaaaaatgttatattattggtaataataaacataattatta |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25158265 |
caagcgaaaaccgaggccttctaaaaatgttatattattggtaataataaacataattatta |
25158326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 25100427 - 25100513
Alignment:
| Q |
183 |
gagtgaaaaggtataacatggcttgttactttcaggtttaaaagtcacaaaaaatttgcttttaaaaaggctaggttgattcttctt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25100427 |
gagtgaaaaggtataacatggcttgttactttcaggtttaaaagtcacaaaaaatttgcttttaaaaaggctaggttgattcttctt |
25100513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 25159517 - 25159603
Alignment:
| Q |
183 |
gagtgaaaaggtataacatggcttgttactttcaggtttaaaagtcacaaaaaatttgcttttaaaaaggctaggttgattcttctt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25159517 |
gagtgaaaaggtataacatggcttgttactttcaggtttaaaagtcacaaaaaatttgcttttaaaaaggctaggttgattcttctt |
25159603 |
T |
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