View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_39 (Length: 266)

Name: NF4030_low_39
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_39
NF4030_low_39
[»] chr2 (17 HSPs)
chr2 (1-259)||(1519061-1519318)
chr2 (88-259)||(630732-630903)
chr2 (88-259)||(636283-636454)
chr2 (88-259)||(7909950-7910121)
chr2 (88-259)||(7917405-7917576)
chr2 (88-259)||(22430349-22430520)
chr2 (88-259)||(22435943-22436114)
chr2 (88-259)||(43776992-43777163)
chr2 (88-259)||(14898784-14898955)
chr2 (88-259)||(22424979-22425150)
chr2 (88-259)||(1525643-1525820)
chr2 (81-254)||(26694147-26694320)
chr2 (88-259)||(14893227-14893402)
chr2 (88-259)||(43771466-43771635)
chr2 (159-254)||(26702321-26702416)
chr2 (166-221)||(19052368-19052424)
chr2 (88-184)||(19052428-19052524)
[»] chr5 (9 HSPs)
chr5 (88-259)||(1536542-1536713)
chr5 (88-259)||(28366968-28367139)
chr5 (88-259)||(28375708-28375879)
chr5 (88-259)||(30963161-30963330)
chr5 (141-259)||(30927370-30927486)
chr5 (158-247)||(34647933-34648022)
chr5 (179-259)||(14663985-14664060)
chr5 (88-139)||(30957704-30957755)
chr5 (88-128)||(14664073-14664113)
[»] chr1 (14 HSPs)
chr1 (88-259)||(27194958-27195129)
chr1 (88-259)||(26711464-26711635)
chr1 (88-259)||(27178957-27179128)
chr1 (88-259)||(15716625-15716796)
chr1 (88-259)||(15711044-15711215)
chr1 (88-259)||(33498406-33498577)
chr1 (88-215)||(33492968-33493095)
chr1 (137-247)||(3343872-3343986)
chr1 (163-247)||(17721815-17721899)
chr1 (163-221)||(9088664-9088722)
chr1 (88-174)||(17721719-17721805)
chr1 (174-242)||(16498728-16498796)
chr1 (84-115)||(47364709-47364740)
chr1 (211-259)||(33491511-33491559)
[»] chr3 (19 HSPs)
chr3 (88-259)||(13990833-13991004)
chr3 (88-259)||(2174205-2174376)
chr3 (88-259)||(9730300-9730471)
chr3 (88-259)||(13985261-13985432)
chr3 (88-259)||(23344377-23344548)
chr3 (88-259)||(40800625-40800796)
chr3 (88-252)||(2168645-2168809)
chr3 (88-259)||(3110496-3110667)
chr3 (88-259)||(13980643-13980814)
chr3 (88-259)||(23338830-23339001)
chr3 (88-259)||(48216323-48216494)
chr3 (88-259)||(3112113-3112284)
chr3 (88-259)||(13991975-13992146)
chr3 (88-259)||(40802549-40802720)
chr3 (142-254)||(34578809-34578921)
chr3 (88-200)||(9724670-9724781)
chr3 (93-165)||(20454624-20454696)
chr3 (197-259)||(9721550-9721612)
chr3 (178-244)||(19307722-19307788)
[»] chr8 (5 HSPs)
chr8 (88-259)||(12756149-12756320)
chr8 (88-259)||(24052021-24052192)
chr8 (83-254)||(41043475-41043646)
chr8 (88-254)||(41048860-41049019)
chr8 (185-215)||(24042894-24042924)
[»] scaffold0211 (1 HSPs)
scaffold0211 (88-259)||(26905-27076)
[»] chr7 (18 HSPs)
chr7 (88-259)||(557859-558030)
chr7 (88-259)||(576042-576213)
chr7 (88-259)||(16648424-16648595)
chr7 (88-259)||(17622785-17622956)
chr7 (88-259)||(32148478-32148649)
chr7 (79-253)||(44655591-44655765)
chr7 (88-254)||(42167613-42167779)
chr7 (88-254)||(42208894-42209066)
chr7 (88-263)||(38011672-38011843)
chr7 (88-220)||(26456872-26457005)
chr7 (167-254)||(25499156-25499243)
chr7 (167-254)||(25493919-25494006)
chr7 (88-184)||(25493818-25493914)
chr7 (88-165)||(25499055-25499132)
chr7 (89-123)||(30027428-30027462)
chr7 (181-217)||(11726511-11726547)
chr7 (178-254)||(22527752-22527828)
chr7 (157-206)||(30027341-30027390)
[»] chr4 (6 HSPs)
chr4 (88-259)||(6162249-6162420)
chr4 (88-259)||(6156552-6156723)
chr4 (88-259)||(20192579-20192750)
chr4 (88-259)||(20197943-20198114)
chr4 (88-253)||(53982096-53982260)
chr4 (182-242)||(12733922-12733982)
[»] scaffold0169 (2 HSPs)
scaffold0169 (88-244)||(8697-8853)
scaffold0169 (109-259)||(10980-11130)
[»] scaffold0004 (2 HSPs)
scaffold0004 (88-259)||(350979-351150)
scaffold0004 (88-259)||(345658-345829)
[»] chr6 (6 HSPs)
chr6 (88-259)||(14855938-14856109)
chr6 (88-259)||(14847080-14847251)
chr6 (88-254)||(26680572-26680737)
chr6 (88-173)||(6933041-6933126)
chr6 (82-140)||(6924845-6924903)
chr6 (88-140)||(10345849-10345901)
[»] scaffold0121 (2 HSPs)
scaffold0121 (167-259)||(11413-11505)
scaffold0121 (88-165)||(11529-11606)
[»] scaffold0124 (2 HSPs)
scaffold0124 (167-259)||(39544-39636)
scaffold0124 (88-174)||(39443-39529)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 1519061 - 1519318
Alignment:
Q  1 tttgagaaaattcgataaatgaggaaattctcattgaatcatttgtagtgagaaaattaaataactcaaaacataacttaaaatttattatgaatattat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||     |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1519061 tttgagaaaattcgataaatgagaaaattctcattgaatccattg-----agaaaattaaataactcaaaacataacttaaaatttgttatgaatattat 1519155  T
Q  101 aagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctcccca----aatcattgtatttctctata 196  Q
    |||||||| || ||||| ||||| | || |||||| ||| |||||| |||||||||||||||||| ||||||||||    | ||||||||||||||||||    
T  1519156 aagtggatatccatatagcaattggattattggattatattgttagcttattgggtcatattgtgcttgctccccaagtcattcattgtatttctctata 1519255  T
Q  197 aatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  1519256 aatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctc 1519318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 630732 - 630903
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  630732 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 630831  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  630832 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 630903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 636283 - 636454
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  636283 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 636382  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  636383 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 636454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 7910121 - 7909950
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  7910121 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 7910022  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  7910021 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctc 7909950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 7917576 - 7917405
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  7917576 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 7917477  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  7917476 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctc 7917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 22430349 - 22430520
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  22430349 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 22430448  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  22430449 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 22430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 22435943 - 22436114
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  22435943 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 22436042  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  22436043 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 22436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 43776992 - 43777163
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  43776992 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 43777091  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  43777092 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctc 43777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 14898784 - 14898955
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| | ||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||  ||||||||| |||||||| ||||||||||||    
T  14898784 ttatgaatattacaggtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccctaaatcattgtat 14898883  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  14898884 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 14898955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 22424979 - 22425150
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||| | |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  22424979 ttatgaatattacaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 22425078  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||| ||||| | ||  ||||||||||||||||||||||||| ||||    
T  22425079 ttctctataaatagagctcatatgtaacccaattatacatcacaagagaataatataatcctctttcttctc 22425150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 1525643 - 1525820
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||| |||||  |||| |||| ||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||    
T  1525643 ttatgaatattataagtggatgtccatatagaaattgggttattggatcatactgttagcttattaggtcatattgtgcttgctccccaagtcattgtat 1525742  T
Q  188 ttctc------tataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||      |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  1525743 ttctctataaatataaatagagctcatatgtaacctaattagagataccaaaaaaataatataatcctctttcttctc 1525820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 26694147 - 26694320
Alignment:
Q  81 aaatttattatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatc 180  Q
    |||||| |||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||   | ||||||| ||||||||||| ||    
T  26694147 aaatttgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagtttattgaaccttattgtgcttgctccccaagtc 26694246  T
Q  181 attgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||| |||||| ||||||    
T  26694247 attgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttc 26694320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 14893227 - 14893402
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatatt----gtgtttgctccccaaatcatt 183  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||    ||| ||||||||||| |||||    
T  14893227 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatatttattgtgcttgctccccaagtcatt 14893326  T
Q  184 gtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  14893327 gtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 14893402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 43771466 - 43771635
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| || ||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  43771466 ttatgaatattacaagtggatgtccatatagcaattgggttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 43771565  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||  ||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  43771566 ttctctataaatagagctcata--taacctaattatacatcacaagagaataatataatcatctttcttctc 43771635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 26702321 - 26702416
Alignment:
Q  159 tattgtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||| |||||| ||||||    
T  26702321 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttc 26702416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 19052424 - 19052368
Alignment:
Q  166 tttgctccccaaatcattgtatttctctataaatagagctcata-tgtaacctaatt 221  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19052424 tttgttcctcaaatcattgtatttctctataaatagagctcatactataacctaatt 19052368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 19052524 - 19052428
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattg 184  Q
    ||||| |||||||||||| || || ||||| |||||  ||| |||  ||||||| |||| |||||||   |||||||| ||||||||||| ||||||    
T  19052524 ttatggatattataagtgaatatccatatagcaattgagttattgagtcatactattagcttattggacgatattgtgcttgctccccaagtcattg 19052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 1536713 - 1536542
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  1536713 ttataaatattataagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggccatattgtgcttgctccccaagtcattgtat 1536614  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  1536613 ttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctc 1536542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 28367139 - 28366968
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| |||||  ||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  28367139 ttatgaatattacaagtggatgtcaatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 28367040  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  28367039 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 28366968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 28375879 - 28375708
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| |||||  ||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  28375879 ttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 28375780  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  28375779 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctc 28375708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 30963330 - 30963161
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||    
T  30963330 ttatgaatattataagtggatgtccatataacaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgtat 30963231  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||  |||| |||||| | ||  |||||||||||||||||| |||||| ||||    
T  30963230 ttctctataaatagagctcata--taacttaattatacatcacaagagaataatataatcatctttcttctc 30963161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 30927486 - 30927370
Alignment:
Q  141 tgttagtttattgggtcatattgtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataa 240  Q
    |||||| |||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||| |||||| | ||  ||| |||||||    
T  30927486 tgttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcata--taacttaattatacatcacaaaagaataa 30927389  T
Q  241 tataatcctctttcatctc 259  Q
    ||||||| |||||| ||||    
T  30927388 tataatcatctttcttctc 30927370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 34648022 - 34647933
Alignment:
Q  158 atattgtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatc 247  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  | ||  ||||||||||||| ||||    
T  34648022 atattgtgcttgctccccaaatcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataatagaatc 34647933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 14664060 - 14663985
Alignment:
Q  179 tcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||||||| |||||| ||||    
T  14664060 tcattgtatttctctataaatagagctca-----aacctaattagagataccaagagaataatataatcttctttcttctc 14663985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 30957755 - 30957704
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcata 139  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  30957755 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcata 30957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 14664113 - 14664073
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggtt 128  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  14664113 ttatgaatattataagtggatgtccatatagcaattgggtt 14664073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 27195129 - 27194958
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  27195129 ttatgaatattacaagtggatgtctatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 27195030  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  27195029 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 27194958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 26711635 - 26711464
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  26711635 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 26711536  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||    
T  26711535 ttctctataaatagagctcatatgtaacctaattagacatcacaagagaataatataatcctctttcttctc 26711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 27179128 - 27178957
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  27179128 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 27179029  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  27179028 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 27178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 15716625 - 15716796
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  15716625 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 15716724  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||||| |||||| ||||    
T  15716725 ttctctataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctc 15716796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 15711044 - 15711215
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||||||||  ||||||||| ||||||||||| |||||||||    
T  15711044 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagtttattggaccatattgtgcttgctccccaagtcattgtat 15711143  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||| ||||||||||||||||||||||| |||||| | ||  |||||||||||||||||| |||||| ||||    
T  15711144 ttctttataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctc 15711215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 33498577 - 33498406
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| | |||| ||||||||  |||||||| ||||||||||| |||||||||    
T  33498577 ttatgaatattacaagtggatgtccatatagcaattgggttgttggatcatatttttagcttattgggctatattgtgcttgctccccaagtcattgtat 33498478  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||| ||||| |||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  33498477 ttctctataaatggagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 33498406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 33493095 - 33492968
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| |||||  |||||||||||||| |||||| ||||||||  |||||||| |||||||| || |||||||||    
T  33493095 ttatgaatattacaagtggatgtccatatagcaattgagttgttggatcatattgttagcttattgggctatattgtgcttgctccctaagtcattgtat 33492996  T
Q  188 ttctctataaatagagctcatatgtaac 215  Q
    |||||||||||||||||| |||||||||    
T  33492995 ttctctataaatagagcttatatgtaac 33492968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 3343986 - 3343872
Alignment:
Q  137 atactgttagtttattgggtcatattgtgtttgctccc----caaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaa 232  Q
    ||||| |||| |||||||||||||||||| ||||| ||    ||| ||||||||||||| |||||||||| || |||||||||||||||| ||||| |||    
T  3343986 atactattagcttattgggtcatattgtgcttgcttccttcccaagtcattgtatttctatataaatagaacttatatgtaacctaattatatataacaa 3343887  T
Q  233 gagaataatataatc 247  Q
    || ||||||| ||||    
T  3343886 gaaaataatagaatc 3343872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 17721815 - 17721899
Alignment:
Q  163 gtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatc 247  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||  | ||  ||||||||||||||||||    
T  17721815 gtgtttgttccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaataatataatc 17721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 9088664 - 9088722
Alignment:
Q  163 gtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaatt 221  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  9088664 gtgtttgttccccaaatcattatatttctctataaatagagcttatatgtaatctaatt 9088722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 17721719 - 17721805
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccc 174  Q
    |||||||||||||||||||||||| || ||| |||| |||| |||| |||||||  ||| ||||||||  |||||||||||||||||    
T  17721719 ttatgaatattataagtggatgtccatgtaagaatttggttattgggtcatactactagcttattgggctatattgtgtttgctccc 17721805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 16498796 - 16498728
Alignment:
Q  174 ccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataata 242  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||  |||   |||||||||||||    
T  16498796 ccaagtcattgtatctctctataaatagagctcatatgtaacctaattgcataccacaagagaataata 16498728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 47364740 - 47364709
Alignment:
Q  84 tttattatgaatattataagtggatgtctata 115  Q
    ||||||||||||||||||||||||||||||||    
T  47364740 tttattatgaatattataagtggatgtctata 47364709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 33491559 - 33491511
Alignment:
Q  211 gtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  33491559 gtaacctaattatacatcacaagagaataatataatcctctttcttctc 33491511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 13990833 - 13991004
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  13990833 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtat 13990932  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  13990933 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 13991004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 2174376 - 2174205
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  2174376 ttatgaatattacaagtgtatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtat 2174277  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  2174276 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 2174205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 9730471 - 9730300
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  9730471 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaaatcattgtat 9730372  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||||||||||| ||||    
T  9730371 ttctctataaatagagctcatatgtaatctaattatacatgacaagagaataatataatcctctttcttctc 9730300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 13985261 - 13985432
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  13985261 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtat 13985360  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||| |||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  13985361 ttctctataaatagagatcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 13985432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 23344377 - 23344548
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  23344377 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 23344476  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  23344477 ttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctc 23344548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 40800796 - 40800625
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  40800796 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 40800697  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||| ||||    
T  40800696 ttctctataaatagagctcatatgtaacctaattatacataacaagagaataatataatcatctttcttctc 40800625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 2168809 - 2168645
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  2168809 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtat 2168710  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctt 252  Q
    |||||||||||||||||||||||||| |||||||| | ||  |||||||||||||||||||||||    
T  2168709 ttctctataaatagagctcatatgtagcctaattatacatcacaagagaataatataatcctctt 2168645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 3110667 - 3110496
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  3110667 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 3110568  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| |||||| | ||  ||||||||||||||||||||||||| ||||    
T  3110567 ttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctc 3110496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 13980814 - 13980643
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    ||||||||||||||||||||||||||||||  |||| |||| |||| ||||||| |||| |||||||| ||||||||| ||||||||||| |||||||||    
T  13980814 ttatgaatattataagtggatgtctatataggaattgggttattgggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgtat 13980715  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||| |||||| ||||    
T  13980714 ttctctataaatagagctcatatgtaatctaattgtacataccaagagaataatataatcatctttcttctc 13980643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 23338830 - 23339001
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| | || |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  23338830 ttatgaatattacaagtggatgtccatatagcaattggattattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 23338929  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  23338930 ttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctc 23339001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 48216494 - 48216323
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| ||| || |||||||| |||||| || ||||||||||| |||||||||    
T  48216494 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgtcagcttattgggccatattttggttgctccccaagtcattgtat 48216395  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||| ||||    
T  48216394 ttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcatctttcttctc 48216323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 3112284 - 3112113
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |  ||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  3112284 ttatgaatattacaagtggatgtccatatagcaattgggttataagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 3112185  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| |||||| | ||  ||||||||||||||||||||||||| ||||    
T  3112184 ttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctc 3112113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 13992146 - 13991975
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||| ||||||| |||| |||||||||||||||||| ||||||  ||| ||||||| |    
T  13992146 ttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctcttcaagtcattgtgt 13992047  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    || | ||||||||||||||||||| |||||||||| | ||| |||||||||||||||||  |||||| ||||    
T  13992046 ttatgtataaatagagctcatatgcaacctaattatacatatcaagagaataatataattatctttcttctc 13991975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 40802720 - 40802549
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| |||||  ||| |||||||||| |||||| ||||||||  |||||||| ||||| ||||| |||||||||    
T  40802720 ttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggcgatattgtgcttgcttcccaagtcattgtat 40802621  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||||| |||||| ||||    
T  40802620 ttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcatctttcttctc 40802549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 34578921 - 34578809
Alignment:
Q  142 gttagtttattgggtcatattgtgtttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataat 241  Q
    ||||| ||||||| |||||||||  ||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  34578921 gttagcttattggatcatattgtacttattccccaagtcattgtatttctctataaatagagcttatatgtaacctaattagtgatactaagagaataat 34578822  T
Q  242 ataatcctctttc 254  Q
    |||||| ||||||    
T  34578821 ataatcatctttc 34578809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 9724781 - 9724670
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    ||||||||||||  |||||||||| ||||| ||||| |||| |||||||||| |||||| || ||||  ||||||||| ||||||||||| |||||||||    
T  9724781 ttatgaatattactagtggatgtccatatagcaattgggttattggatcatattgttagctttttggc-catattgtgcttgctccccaagtcattgtat 9724683  T
Q  188 ttctctataaata 200  Q
    |||||||||||||    
T  9724682 ttctctataaata 9724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 20454624 - 20454696
Alignment:
Q  93 aatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtg 165  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||| ||||||| || ||||||||    
T  20454624 aatattataagtggatgtccatatagcaattgggttattggatcatactattaatttattgtgttatattgtg 20454696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 9721612 - 9721550
Alignment:
Q  197 aatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||| ||||||||||||  ||||||| | ||  ||||||||||||||||||||||||| ||||    
T  9721612 aataaagctcatatgtactctaattatacatcacaagagaataatataatcctctttcttctc 9721550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 19307788 - 19307722
Alignment:
Q  178 atcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatata 244  Q
    |||||||||||||||||||||||||| ||| ||||||| ||| | || || | | ||||||||||||    
T  19307788 atcattgtatttctctataaatagagatcacatgtaacataacttgacatccaaggagaataatata 19307722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 12756320 - 12756149
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  12756320 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 12756221  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  12756220 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctc 12756149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 24052192 - 24052021
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| || |||||||| |||||||||||  ||| |||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  24052192 ttatgaatattacaaatggatgtccatataacaattgagttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgtat 24052093  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  24052092 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctc 24052021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 83 - 254
Target Start/End: Original strand, 41043475 - 41043646
Alignment:
Q  83 atttattatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcat 182  Q
    |||| |||||||||||| ||||||||||||||||| ||||| |||| |||||||||| |||||| ||||||||   ||||||| || |||||||| ||||    
T  41043475 atttgttatgaatattacaagtggatgtctatatagcaattgggttattggatcatattgttagcttattgggctttattgtgcttactccccaagtcat 41043574  T
Q  183 tgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||  |||||||||||||    
T  41043575 tgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaatagcataatcctctttc 41043646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 41048860 - 41049019
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| |||||  ||| || |||       |||| |||||||||| |||| |||||||||||||| |||||||||    
T  41048860 ttatgaatattacaagtggatgtccatatagcaattgagttatttgat-------ttagcttattgggtcttattatgtttgctccccaagtcattgtat 41048952  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    || | |||||||||||||||||||||||||||||| | ||  ||||| ||||| |||||| ||||||    
T  41048953 ttatttataaatagagctcatatgtaacctaattatacatcacaagataataacataatcttctttc 41049019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 24042924 - 24042894
Alignment:
Q  185 tatttctctataaatagagctcatatgtaac 215  Q
    |||||||||||||||||||||||||||||||    
T  24042924 tatttctctataaatagagctcatatgtaac 24042894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 26905 - 27076
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||    
T  26905 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggtcatattgtgcttgctccccaagtcattgtat 27004  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||||||||||| |||| | | |||  |||||||||||||||||||||||| ||||    
T  27005 ttctctataaatagagctcatatgtaacataataaaacataaaaagagaataatataatcctctttcttctc 27076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 558030 - 557859
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| ||||||||| ||||| ||||| |||||||||    
T  558030 ttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgcttgcttcccaagtcattgtat 557931  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||| |||||||||||||||||  | ||  ||||||||||||||||||||||||| ||||    
T  557930 ttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctc 557859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 576213 - 576042
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| ||||||||| ||||| ||||| |||||||||    
T  576213 ttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgattgcttcccaagtcattgtat 576114  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||| |||||||||||||||||  | ||  ||||||||||||||||||||||||| ||||    
T  576113 ttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctc 576042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 16648424 - 16648595
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  16648424 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 16648523  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||| |||||||||||||||| ||||    
T  16648524 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctc 16648595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 17622785 - 17622956
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  17622785 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtat 17622884  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||| |||||||||||||||| ||||    
T  17622885 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctc 17622956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 32148478 - 32148649
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||| ||||||||| |||||||| || |||||||||    
T  32148478 ttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgtat 32148577  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||| |||||||||||||||| | ||  ||||| ||||||||||||||||||| ||||    
T  32148578 ttctctataaatagagcttatatgtaacctaattatacatcacaagaaaataatataatcctctttcttctc 32148649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 44655591 - 44655765
Alignment:
Q  79 taaaatttattatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaa 178  Q
    |||||||| |||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||||||| | ||||| ||||| |||||     
T  44655591 taaaatttgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggtcttgttgtgcttgctacccaag 44655690  T
Q  179 tcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctcttt 253  Q
    || ||||||||||||||||||  ||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  44655691 tctttgtatttctctataaattaagctcatatgtaacctaattatacatcacaagagaataatataatcctcttt 44655765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 42167779 - 42167613
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    ||||||||||||  |||||||||| ||||| |||||  ||| || ||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  42167779 ttatgaatattaccagtggatgtccatatagcaattgagttatttgatcatactgttagtttattgggccttattgtgcttgctccccaagtcattgtat 42167680  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||| ||||| |||||||||||||    
T  42167679 ttctctataaatagagctcatatgtaacctaattatacatcacaagaaaataacataatcctctttc 42167613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 42208894 - 42209066
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||    
T  42208894 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgtat 42208993  T
Q  188 ttctctataaatagagctcatatgtaacctaattaga--tatac----caagagaataatataatcctctttc 254  Q
    ||||||||||||||||||||||||||||||||||| |  |||||    |||||||||||||||||| ||||||    
T  42208994 ttctctataaatagagctcatatgtaacctaattataattatacatcacaagagaataatataatcatctttc 42209066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 38011843 - 38011672
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||||||||| |||| || | ||||||| |||||||||||||   |||| |  | | ||||||| |||||||||    
T  38011843 ttatgaatattagaagtggatgtccatataacaattgggttattaggtcatactcttagtttattgggctttattatactggatccccaagtcattgtat 38011744  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctcactc 263  Q
    | ||||||  ||||||||||||||||||||||||  ||||    ||||||||||||||||||||||| ||||||||    
T  38011743 tactctatctatagagctcatatgtaacctaattgaatat----agagaataatataatcctctttcttctcactc 38011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 26457005 - 26456872
Alignment:
Q  88 ttatgaatattataagtggatgtctatataa-caattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgta 186  Q
    |||||||||||||||||||||||| |||||  ||||| | || |||| | ||||| |||| |||||| |  |||||| | |||||| |||||||||||||    
T  26457005 ttatgaatattataagtggatgtccatataggcaattggattattgggttatactattagcttattgtgctatattgcgcttgctctccaaatcattgta 26456906  T
Q  187 tttctctataaatagagctcatatgtaacctaat 220  Q
    ||||||||||||||||||||||||||||| ||||    
T  26456905 tttctctataaatagagctcatatgtaacttaat 26456872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 25499156 - 25499243
Alignment:
Q  167 ttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||  ||||||||||||||| |||||||||    
T  25499156 ttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaataatatattcctctttc 25499243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 25493919 - 25494006
Alignment:
Q  167 ttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | | ||  ||||||||||||||| |||||||||    
T  25493919 ttgctccccaagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaataatatattcctctttc 25494006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 25493818 - 25493914
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattg 184  Q
    |||||||||||||||||||||||| ||||| ||||||||||  ||| ||||||| |||| |||||||  ||||||||| |||||||| || ||||||    
T  25493818 ttatgaatattataagtggatgtccatatagcaattaggttaatgggtcatactattagcttattggaccatattgtgcttgctccctaagtcattg 25493914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 25499055 - 25499132
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtg 165  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||| ||||||| |||| |||||||  |||||||||    
T  25499055 ttatgaatattataagtggatgtccatatagcaattaggttattgggtcatactattagcttattggaccatattgtg 25499132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 30027462 - 30027428
Alignment:
Q  89 tatgaatattataagtggatgtctatataacaatt 123  Q
    |||||||||||||||||||||||||||||||||||    
T  30027462 tatgaatattataagtggatgtctatataacaatt 30027428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 11726547 - 11726511
Alignment:
Q  181 attgtatttctctataaatagagctcatatgtaacct 217  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11726547 attgtatttctctataaatagagctcacatgtaacct 11726511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 22527752 - 22527828
Alignment:
Q  178 atcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaat-aatataatcctctttc 254  Q
    |||||| ||||||||||||||||||  ||| ||||||| | |||||||||| ||||| ||| ||| ||||||||||||    
T  22527752 atcattatatttctctataaatagatatcacatgtaacat-attagatataacaagaaaataaatgtaatcctctttc 22527828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 30027390 - 30027341
Alignment:
Q  157 catattgtgtttgctccccaaatcattgtatttctctataaatagagctc 206  Q
    |||||||||||||||||  || ||| ||||||| ||||||||||||||||    
T  30027390 catattgtgtttgctcctaaagtcactgtatttttctataaatagagctc 30027341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 6162249 - 6162420
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| |||||||| || |||||  |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6162249 ttatgaatattacaagtggatatccatatagaaattgggttattggatcatattgttagtttattgggtcatattgtgcttgctccccaagtcattgtat 6162348  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  6162349 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctc 6162420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 6156552 - 6156723
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||| ||||  |||||  |||| |||| |||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  6156552 ttatgaatattacaagtgaatgttcatatagaaattgggttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgtat 6156651  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  6156652 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 6156723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 20192750 - 20192579
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| |||||||| || |||||||||    
T  20192750 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctcccaaagtcattgtat 20192651  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||| |||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  20192650 ttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 20192579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 20198114 - 20197943
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| || |||||||| ||||| ||||| |||| |||||||||| ||||||||||||||| ||||||||| |||||||| || |||||||||    
T  20198114 ttatgaatattacaaatggatgtccatatagcaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgtat 20198015  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||| |||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  20198014 ttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 20197943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 53982096 - 53982260
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| || |||||||||||||| |||||||| | ||||||| |||||||| || |||||||||    
T  53982096 ttatgaatattacaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggccttattgtgcttgctccc-aagtcattgtat 53982194  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctcttt 253  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  53982195 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctcttt 53982260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 12733982 - 12733922
Alignment:
Q  182 ttgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataata 242  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||  |||||||||||||    
T  12733982 ttgtatttctctataaatagagctcacatgtaacctaattggttatcacaagagaataata 12733922  T

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Target: scaffold0169 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 8697 - 8853
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||| ||||||| |||| |||||||||||||||||| ||||||||||| |||||||||    
T  8697 ttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtat 8796  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatata 244  Q
    |||||||||||||||| | |||||||| |||||| |||| |||||||||||||||||    
T  8797 ttctctataaatagagattatatgtaatctaattggatacaccaagagaataatata 8853  T

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Target: scaffold0169; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 259
Target Start/End: Original strand, 10980 - 11130
Alignment:
Q  109 gtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtatttctctataaatagagctcat 208  Q
    ||||||||| ||||| |||| |||| ||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  10980 gtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagctcat 11079  T
Q  209 atgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    || |||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  11080 atataacctaattggatataccaagagaataatataatcatctttcttctc 11130  T

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Target: scaffold0004 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 351150 - 350979
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||  ||||||||| ||||||||||| |||||||||    
T  351150 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggtccatattgtgcttgctccccaagtcattgtat 351051  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||   |||||||||||||||||||||||| ||||    
T  351050 ttctctataaatagagctcatatgtaacctaattatacatcataagagaataatataatcctctttcttctc 350979  T

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Target: scaffold0004; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 345829 - 345658
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| |||||| |||||||| ||||||||| || |||||||| |||||||||    
T  345829 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttactccccaagtcattgtat 345730  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    |||||||||||||||||||| |||||||||||||| | ||   |||| ||||||||||||||| ||| ||||    
T  345729 ttctctataaatagagctcacatgtaacctaattatacatcataagaaaataatataatcctcattcttctc 345658  T

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Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 14855938 - 14856109
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||  ||||||| ||||||||| ||||||||||  |||||||||    
T  14855938 ttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcatattgggccatattgtgcttgctccccacgtcattgtat 14856037  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||| ||||    
T  14856038 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctc 14856109  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 14847080 - 14847251
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| |||||||| || ||||| ||||| |||| || ||||||| |||||| |||||||| ||||||||| ||||||||||  |||||||||    
T  14847080 ttatgaatattacaagtggatatccatatagcaattgggttatttgatcatattgttagcttattgggccatattgtgattgctccccacgtcattgtat 14847179  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||||||| ||||||||||||||||||| | ||  |||||||||||||||||| |||||| ||||    
T  14847180 ttctctataaatagaactcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctc 14847251  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 26680572 - 26680737
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccccaaatcattgtat 187  Q
    |||||||||||| ||||||||||| || || |||||  ||| || ||||||||||||||||||||||| | ||||||| |||||||| || |||||||||    
T  26680572 ttatgaatattacaagtggatgtccatgtagcaattgagttttttgatcatactgttagtttattgggccttattgtgcttgctccc-aagtcattgtat 26680670  T
Q  188 ttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttc 254  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||| |||||||||||||    
T  26680671 ttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctctttc 26680737  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 6933041 - 6933126
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctcc 173  Q
    |||||||||||||||||||||||| ||||| ||||| |||| |||| |||||||||||| |||||||   ||||||||||||||||    
T  6933041 ttatgaatattataagtggatgtccatatagcaattgggttattgggtcatactgttagcttattggactatattgtgtttgctcc 6933126  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 6924845 - 6924903
Alignment:
Q  82 aatttattatgaatattataagtggatgtctatataacaattaggttgttggatcatac 140  Q
    ||||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||    
T  6924845 aatttgttatgaatattataagtggatgtcgatatagcaattgggttattggatcatac 6924903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 10345901 - 10345849
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatac 140  Q
    |||||||||||| ||||||||||  |||||||||||| ||| ||| |||||||    
T  10345901 ttatgaatattacaagtggatgttcatataacaattaagttattgcatcatac 10345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 11505 - 11413
Alignment:
Q  167 ttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||   | |||| |||||||||||||||||||||||| ||||    
T  11505 ttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctctttcttctc 11413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 11606 - 11529
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtg 165  Q
    |||||||||||||||||||||||| | ||| |||||||||| |||| ||||||| |||| |||||||  |||||||||    
T  11606 ttatgaatattataagtggatgtccacatagcaattaggttattgggtcatactattagcttattggaccatattgtg 11529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 39544 - 39636
Alignment:
Q  167 ttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattagatataccaagagaataatataatcctctttcatctc 259  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||   | |||| |||||||||||||||||||||||| ||||    
T  39544 ttgctcctcaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctctttcttctc 39636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 39443 - 39529
Alignment:
Q  88 ttatgaatattataagtggatgtctatataacaattaggttgttggatcatactgttagtttattgggtcatattgtgtttgctccc 174  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| || |||| |||| |||||||  ||||||||| ||||||||    
T  39443 ttatgaatattataagtggatgtccatataacaattaggttattgggtcgtactattagcttattggaccatattgtgcttgctccc 39529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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