View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_4 (Length: 652)
Name: NF4030_low_4
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 31033398 - 31033701
Alignment:
| Q |
19 |
gttttgggtatggctttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgtacctgaaaagacg |
118 |
Q |
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| T |
31033398 |
gttttgggtatggttttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgtacctgaaaagacg |
31033497 |
T |
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| Q |
119 |
tccatttctatgtgacatgcatactctttataccttgaaagatcagcccaatattttaacatcatacgacaaaaatgaactaagagttattttatacttc |
218 |
Q |
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| T |
31033498 |
tccatttctatgtgacat----actctttatatcttgaaagatcagcccaatattttaacatcatatgacaaaaatgaactaagagttattttatacttc |
31033593 |
T |
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| Q |
219 |
atttttaaaatatcatgcttatataaatttatgattaataagaactttttatttgggtacatataaaataagaac--ttatttagaatatatcaaatgga |
316 |
Q |
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| T |
31033594 |
atttttaaaatatcttgcttatataaatttatgataaataagaactttttatttggatacttataaaataagaacttttatttagaatatatcaaatgga |
31033693 |
T |
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| Q |
317 |
ataccttt |
324 |
Q |
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| T |
31033694 |
ataccttt |
31033701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 537 - 642
Target Start/End: Original strand, 31033877 - 31033982
Alignment:
| Q |
537 |
gctcttcgttgacacaactagaaaatttatttattttgacattcatttagccatgtttcaatatcggataaattgagacccattcaagtcaccggagtat |
636 |
Q |
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| T |
31033877 |
gctctttgttaacacaactagaaaatttatttattttgacattcatttagccgtgtctcaaaattggataaatggagacccattcaagtcatcggagtat |
31033976 |
T |
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| Q |
637 |
tatcta |
642 |
Q |
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| |||| |
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| T |
31033977 |
tttcta |
31033982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 31033698 - 31033747
Alignment:
| Q |
357 |
ctttaatttaaagcagcgtctatgcctaaaataaactgagtcgaagacac |
406 |
Q |
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| T |
31033698 |
ctttaatttaaagcagcgtctatgcctaaaataaactgagtcggagacac |
31033747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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