View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_40 (Length: 266)
Name: NF4030_low_40
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33080334 - 33080564
Alignment:
| Q |
1 |
caattattcataaat----gtgtcaaagacattaatgaaagaatatactataactgcaattgaagt----gttaaacactaaactgtaaaccctaatcat |
92 |
Q |
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| T |
33080334 |
caattattcataaataatcgtgtcaaaggcattaaagaaacaatatactataactgcaattgaagttttaattaaacactaaaccgtaaaccctaatcat |
33080433 |
T |
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| Q |
93 |
gtgggagacgttaaagaaatagctggttaaatttccatgtaataaagaaggaagtaatatagctgcaattgaaagaatatataactgcaattgaaatgtt |
192 |
Q |
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| T |
33080434 |
gtgggagacgttaaa-aaatagctggttaaatttccatgtaataaagaatgaagtaacatagctgcaattgaaagaatatataactgcaattgaagtgat |
33080532 |
T |
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| Q |
193 |
aattacgtaggagacattaaagaaagaatata |
224 |
Q |
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| T |
33080533 |
aattatgtatgagacattaaagaaagaatata |
33080564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 33095201 - 33095248
Alignment:
| Q |
145 |
agtaatatagctgcaattgaaagaatatataactgcaattgaaatgtt |
192 |
Q |
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| T |
33095201 |
agtaatatagctgcaattgaaagaatatataactgcaattgaagtgtt |
33095248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 22764510 - 22764696
Alignment:
| Q |
10 |
ataaatgtgtcaaagacattaatgaaagaatatactataactgcaattgaagtgttaaacactaaactgtaaaccctaatcatgtgggagacgttaaaga |
109 |
Q |
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| T |
22764510 |
ataattgtgtcgaagaaattaaagaaagaatatattataactgtaattgaagtgttaaacactaaaccttaaaccctcatcatgtcagagacattaaaga |
22764609 |
T |
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| Q |
110 |
aatagctggttaaatttccatgtaataaagaaggaagtaatatagctgcaattgaaagaatatataactgcaattgaaatgttaatt |
196 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22764610 |
aatagctggttaaatttccttgtaataaagaaggaagaaatatagctgcaattgaaagaatatataactgcaattgaagtgttaatt |
22764696 |
T |
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