View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_41 (Length: 264)

Name: NF4030_low_41
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_41
NF4030_low_41
[»] chr1 (1 HSPs)
chr1 (9-244)||(5130464-5130708)
[»] chr5 (9 HSPs)
chr5 (173-247)||(8677636-8677710)
chr5 (173-248)||(1600480-1600555)
chr5 (173-248)||(8535332-8535407)
chr5 (173-248)||(9074920-9074995)
chr5 (174-248)||(8528778-8528852)
chr5 (173-247)||(8644043-8644117)
chr5 (173-248)||(8548291-8548366)
chr5 (176-247)||(8636701-8636772)
chr5 (96-130)||(36551390-36551424)
[»] chr4 (2 HSPs)
chr4 (174-248)||(9442939-9443013)
chr4 (96-128)||(49370040-49370072)
[»] scaffold0627 (1 HSPs)
scaffold0627 (173-248)||(4491-4566)
[»] chr6 (1 HSPs)
chr6 (173-248)||(16716178-16716253)
[»] chr7 (3 HSPs)
chr7 (199-248)||(35779694-35779743)
chr7 (96-130)||(46355860-46355894)
chr7 (173-238)||(48362064-48362129)
[»] chr3 (2 HSPs)
chr3 (96-130)||(26990456-26990490)
chr3 (96-130)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (96-130)||(2610832-2610866)
chr2 (96-130)||(17429294-17429328)
chr2 (96-130)||(39709205-39709239)
chr2 (93-130)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 5130464 - 5130708
Alignment:
Q  9 agcataggcagtacggtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaagggagcctcagattcaac--------- 99  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             
T  5130464 agcacaggcggtacagtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaaggaagcctcagattcaacaacaacaac 5130563  T
Q  100 aaccaagccatatctcactaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgtatattcagcacct 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5130564 aaccaagccatatctcattaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgaatattcagcacct 5130663  T
Q  200 caatattgtctcctttcacaatatccttcattgaaattagacttg 244  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  5130664 caatattgtctcctttcacaatatcctttagtgaaattagacttg 5130708  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 8677636 - 8677710
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 247  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  8677636 cttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaa 8677710  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 1600555 - 1600480
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||| ||||||||||||||||||    
T  1600555 cttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaat 1600480  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 8535332 - 8535407
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| || |||||||| ||||||||||||||||||    
T  8535332 cttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaat 8535407  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 9074995 - 9074920
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||  | |||||||| ||||||||||||||||||    
T  9074995 cttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaat 9074920  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 8528778 - 8528852
Alignment:
Q  174 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| ||||||||||||||||||    
T  8528778 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaat 8528852  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 8644043 - 8644117
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 247  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||| ||| |||||||||||||    
T  8644043 cttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaa 8644117  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 8548366 - 8548291
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  | |||||||| ||| ||||||||||||||    
T  8548366 cttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaat 8548291  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 8636701 - 8636772
Alignment:
Q  176 accttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 247  Q
    |||||||||| |||||||||||||| ||||||||||||||||| | |||||||| ||| |||||||||||||    
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaa 8636772  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 36551424 - 36551390
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  36551424 caacaaccaagccttatctcactaagtggggtcgg 36551390  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 9442939 - 9443013
Alignment:
Q  174 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| ||||||||||||||||||    
T  9442939 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaat 9443013  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 49370072 - 49370040
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtc 128  Q
    |||||||||||||||||| ||||||||||||||    
T  49370072 caacaaccaagccatatcccactaagtggggtc 49370040  T

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Target: scaffold0627 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 4491 - 4566
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||   |||||||| ||| ||||||||||||||    
T  4491 cttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaat 4566  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 16716178 - 16716253
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||   |||||||| ||| ||||||||||||||    
T  16716178 cttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaat 16716253  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 35779694 - 35779743
Alignment:
Q  199 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 248  Q
    ||||||||||||||||| |||| |||||||| ||| ||||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaat 35779743  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 46355860 - 46355894
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcgg 46355894  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 48362129 - 48362064
Alignment:
Q  173 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaatta 238  Q
    ||||||||||||| | ||||| |||||| ||||| ||||||||||  | |||||||| ||||||||    
T  48362129 cttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaatta 48362064  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 26990490 - 26990456
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  26990490 caacaaccaagccttatctcactaagtggggtcgg 26990456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 53519858 - 53519824
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  53519858 caacaaccaagccttatctcactaagtggggtcgg 53519824  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 2610866 - 2610832
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  2610866 caacaaccaagccttatctcactaagtggggtcgg 2610832  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 17429328 - 17429294
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    ||||||||||||| |||||||||||||||||||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcgg 17429294  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 39709205 - 39709239
Alignment:
Q  96 caacaaccaagccatatctcactaagtggggtcgg 130  Q
    |||||||||||||||||| ||||||||||||||||    
T  39709205 caacaaccaagccatatcccactaagtggggtcgg 39709239  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 33504505 - 33504468
Alignment:
Q  93 attcaacaaccaagccatatctcactaagtggggtcgg 130  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504505 attcaacaaccaagccttatcccactaagtggggtcgg 33504468  T

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