View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_48 (Length: 251)

Name: NF4030_low_48
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_48
NF4030_low_48
[»] chr7 (12 HSPs)
chr7 (1-241)||(46481370-46481610)
chr7 (27-238)||(46475755-46475969)
chr7 (59-228)||(46492689-46492858)
chr7 (55-177)||(46324285-46324407)
chr7 (31-124)||(46510005-46510101)
chr7 (47-177)||(46522574-46522704)
chr7 (47-177)||(46530007-46530137)
chr7 (55-177)||(46328717-46328839)
chr7 (55-177)||(46519240-46519362)
chr7 (77-177)||(46525685-46525785)
chr7 (137-230)||(46513666-46513755)
chr7 (79-168)||(46464054-46464143)
[»] chr4 (1 HSPs)
chr4 (53-183)||(89069-89199)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46481370 - 46481610
Alignment:
Q  1 agaagacgattaaacaaaactctagcgaatagttgcttgagaattgagataagatcagaacttcttgataaaatcataaatgtgattactgatttcctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481370 agaagacgattaaacaaaactctagcgaatagttgcttgagaattgagataagatcagaacttcttgataaaatcataaatgtgattactgatttcctca 46481469  T
Q  101 gcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctccaaatttggcacatcgttcttgaaaccaccgctctcgatgtaatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46481470 gcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctccaaatttggcacatcgttcttgaaaccaccgctctcgatgtattgct 46481569  T
Q  201 tggtaccaaaagaagtgtaaactaaatccagatcacctatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46481570 tggtaccaaaagaagtgtaaactaaatccagatcacctatg 46481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 46475755 - 46475969
Alignment:
Q  27 gaatagttgcttgagaattgag---ataagatcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtg 123  Q
    ||||||| ||||| ||||||||   ||| |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||    
T  46475755 gaatagtggcttgcgaattgagttgatacgatcagaatttcttgataaaatcataaatgtgattgctgatatcttcagcagcttcttggttgttaaagtg 46475854  T
Q  124 agccacacctttttgtataaccacttcctccaaatttggcacatcgttcttgaaaccaccgctctcgatgtaatgcttggtaccaaaagaagtgtaaact 223  Q
    |||||||||||  |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  46475855 agccacaccttcctgtataacaacttcctccaaatttggcacatctttcttgaaaccaccactctcgatgtattgcttggtaccaaaagaagtgtaaact 46475954  T
Q  224 aaatccagatcacct 238  Q
      ||||| |||||||    
T  46475955 gcatccaaatcacct 46475969  T

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Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 46492689 - 46492858
Alignment:
Q  59 aacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctccaaat 158  Q
    ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  46492689 aacttcttgataaaatcataaatgtgattgctaatatcctcagcagcttcttggttgttgaagtgagccacaccttcctgtataacaacttcctccaaat 46492788  T
Q  159 ttggcacatcgttcttgaaaccaccgctctcgatgtaatgcttggtaccaaaagaagtgtaaactaaatc 228  Q
    | |||||||| |||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  46492789 tgggcacatctttcttgaagccaccactctcgatgtattgcttggtaccagaagaagtgtaaactaaatc 46492858  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 46324407 - 46324285
Alignment:
Q  55 tcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctcc 154  Q
    ||||||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| | || |||||| |||    
T  46324407 tcagaacttcttgatgaattcataaatgtgattactgatttcctctgctgcttcttgattgttgaagtgagccactcctttttggacaatcacttcttcc 46324308  T
Q  155 aaatttggcacatcgttcttgaa 177  Q
    ||||| |||||||| | ||||||    
T  46324307 aaattcggcacatcttccttgaa 46324285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 46510005 - 46510101
Alignment:
Q  31 agttgcttgagaattgag---ataagatcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtga 124  Q
    ||||||||||||||||||   |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  46510005 agttgcttgagaattgagttgataagatcaatacttcttgataaaatcataaatgtgattactgacttcctcagcagcttcttggttgttgtagtga 46510101  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 46522574 - 46522704
Alignment:
Q  47 agataagatcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataacca 146  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| |||| ||    
T  46522574 agataagctcagaacttcttgatgaattcataaatgtgattacttatttcctctgctgcttcttgattgttgaagtgcgccactcctttttggataatca 46522673  T
Q  147 cttcctccaaatttggcacatcgttcttgaa 177  Q
    |||| |||| ||| || ||||| | ||||||    
T  46522674 cttcttccagattgggaacatcttccttgaa 46522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 46530007 - 46530137
Alignment:
Q  47 agataagatcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataacca 146  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| |||| ||    
T  46530007 agataagctcagaacttcttgatgaattcataaatgtgattacttatttcctctgctgcttcttgattgttgaagtgcgccactcctttttggataatca 46530106  T
Q  147 cttcctccaaatttggcacatcgttcttgaa 177  Q
    |||| |||| ||| || ||||| | ||||||    
T  46530107 cttcttccagattgggaacatcttccttgaa 46530137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 46328839 - 46328717
Alignment:
Q  55 tcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctcc 154  Q
    |||||||||| |||| || || ||||||| |||||||||||||||  |||||||||| |||||||||||||| || |||||||| |||| |||||| |||    
T  46328839 tcagaacttcatgatgaattcgtaaatgtaattactgatttcctcttcagcttcttgattgttgaagtgagcaactcctttttgaataatcacttcttcc 46328740  T
Q  155 aaatttggcacatcgttcttgaa 177  Q
    ||||| |||||||| | ||||||    
T  46328739 aaattcggcacatcttccttgaa 46328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 46519240 - 46519362
Alignment:
Q  55 tcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctcc 154  Q
    |||||| |||||||| || || |||||||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||| | || ||||||||||    
T  46519240 tcagaatttcttgatgaattcgtaaatgtgattactaatttcctctgcagcttcttgattgttgaaatgagctactcctttttgcacaatcacttcctcc 46519339  T
Q  155 aaatttggcacatcgttcttgaa 177  Q
    ||||| |||||||| | ||||||    
T  46519340 aaattcggcacatcttccttgaa 46519362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 46525685 - 46525785
Alignment:
Q  77 taaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctccaaatttggcacatcgttcttga 176  Q
    ||||||| |||||||||||||||  |||||||||| |||||||||||||| || |||||||| | || |||||||||||||||  ||||||| | |||||    
T  46525685 taaatgtaattactgatttcctcttcagcttcttgattgttgaagtgagcaactcctttttgaacaatcacttcctccaaattcagcacatcttccttga 46525784  T
Q  177 a 177  Q
    |    
T  46525785 a 46525785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 46513666 - 46513755
Alignment:
Q  137 tgtataaccacttcctccaaatttggcacatcgttcttgaaaccaccgctctcgatgtaatgcttggtaccaaaagaagtgtaaactaaatcca 230  Q
    ||||||||||||||||||||||||||||||    ||||||||||||| || || ||||| ||||| | ||||||||||  |||||||| |||||    
T  46513666 tgtataaccacttcctccaaatttggcaca----tcttgaaaccaccactttcaatgtattgcttcgcaccaaaagaaacgtaaactatatcca 46513755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 46464054 - 46464143
Alignment:
Q  79 aatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcctccaaatttggcacatc 168  Q
    |||||| ||||||||||| || || |||||||| || || |||||| |||| |||||||||| || ||||||||| ||||| || |||||    
T  46464054 aatgtgtttactgatttcttctgctgcttcttgattattaaagtgacccactcctttttgtacaatcacttcctctaaattcggtacatc 46464143  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 89199 - 89069
Alignment:
Q  53 gatcagaacttcttgataaaatcataaatgtgattactgatttcctcagcagcttcttggttgttgaagtgagccacacctttttgtataaccacttcct 152  Q
    |||||||||||||  ||||| |||||||||||||| ||||| || |  || |||||||||||||||||||| || |  ||||  || | |||||||||||    
T  89199 gatcagaacttctgaataaagtcataaatgtgattgctgatgtcttgtgctgcttcttggttgttgaagtgtgctatcccttcctgcacaaccacttcct 89100  T
Q  153 ccaaatttggcacatcgttcttgaaaccacc 183  Q
    |||||  ||| ||||| ||||||||||||||    
T  89099 ccaaacctggaacatctttcttgaaaccacc 89069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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