View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_49 (Length: 250)
Name: NF4030_low_49
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 37795576 - 37795434
Alignment:
| Q |
18 |
agaactatccatatcaatcattagatttaactaacgcccacgatttaattatttgtttaaaacctcctgtggccctgtgctcaccctaaa--attgacgc |
115 |
Q |
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| T |
37795576 |
agaactatccatatcaatcattagatttaactaacgcccacgaattaattatttgtttaaaacttctcgtggccctgtgctcaccctaaaatattgacgc |
37795477 |
T |
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| Q |
116 |
tcagtatattggctctctccaacattccaagtctttaccagat |
158 |
Q |
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| T |
37795476 |
tcagtatattggctctctccaacattccaaatctttaccagat |
37795434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 37795386 - 37795306
Alignment:
| Q |
157 |
ataaggagcgctgcaaagctcttggccttgacttcatgtggcttaccaacttcattgcattccaatctttatcttattgctc |
238 |
Q |
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| T |
37795386 |
ataaggagcgctgcaa-gctcttggccttgacttcatgtggcttaccaacttcattgcattccaatctttatcttattgctc |
37795306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 6745878 - 6745975
Alignment:
| Q |
60 |
atttaattatttgtttaaaacctcctgtggccctgtgctcaccctaaa--attgacgctcagtatattggctctctccaacattccaagtctttacca |
155 |
Q |
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| T |
6745878 |
atttaattatttgctttaaatctcctgtggcactatactcaccctaaaatattaacactcagtttattggctctctccaaaattctaaatcattacca |
6745975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 6476075 - 6475991
Alignment:
| Q |
63 |
taattatttgtttaaaacctcctgtggccctgtgctcaccctaaaat--tgacgctcagtatattggctctctccaacattccaa |
145 |
Q |
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| T |
6476075 |
taattatttgctttaaatctcctgtggcactatactcaccctaaaatattaacactcagtttattggctctctccaaaattccaa |
6475991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 6516210 - 6516124
Alignment:
| Q |
61 |
tttaattatttgtttaaaacctcctgtggccctgtgctcaccctaaa--attgacgctcagtatattggctctctccaacattccaa |
145 |
Q |
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| T |
6516210 |
tttaattatttgctttaaatctcctgtggcactatactcaccctaaaatattaacactcagtttattggctctccccaaaattccaa |
6516124 |
T |
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