View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_52 (Length: 243)
Name: NF4030_low_52
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 47904140 - 47904348
Alignment:
| Q |
17 |
agatacaaacctgttcgttttatgcgaccatcatcatcatactttccatcttctatggaaaaactactctgtggtattgtcatgaatctctttgtttctt |
116 |
Q |
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| T |
47904140 |
agatacaaacctgttcgtttcatgcgaccatcatcatcatactttccatcttctatggaaaaactactctgcgttattgtcatgaatctctttgtttctt |
47904239 |
T |
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| Q |
117 |
tgcaaacggttgagaaattgatgcattacattagcagattttattaagagaattaaggaaaggcttagccaaagatggcaactatttaatggcctgatat |
216 |
Q |
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| T |
47904240 |
tgcaaacggttgagaaattgatgcattacattagcagattttattaagagaattaaggaaaggcttagccaaagatggcaactatttaatggcctgatat |
47904339 |
T |
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| Q |
217 |
gatattatt |
225 |
Q |
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||||||||| |
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| T |
47904340 |
gatattatt |
47904348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 47920043 - 47920107
Alignment:
| Q |
23 |
aaacctgttcgttttatgcgaccatcatcatcatactttccatcttctatggaaaaactactctg |
87 |
Q |
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| T |
47920043 |
aaacctgttcgttttatgagaccatcatcatcatatttttcatcatgtatggagaagctactctg |
47920107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 47925254 - 47925293
Alignment:
| Q |
17 |
agatacaaacctgttcgttttatgcgaccatcatcatcat |
56 |
Q |
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| T |
47925254 |
agatacaaacctgttcgttttacgcgaccatcatcatcat |
47925293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 47911205 - 47911239
Alignment:
| Q |
23 |
aaacctgttcgttttatgcgaccatcatcatcata |
57 |
Q |
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| T |
47911205 |
aaacctgttcgttttatgtgaccatcatcatcata |
47911239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 42996816 - 42996777
Alignment:
| Q |
17 |
agatacaaacctgttcgttttatgcgaccatcatcatcat |
56 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| |
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| T |
42996816 |
agatacagacctgttcgatttatgcgaccatcatcatcat |
42996777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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