View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_53 (Length: 242)
Name: NF4030_low_53
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42213011 - 42213247
Alignment:
| Q |
1 |
catcggtcatcatggacttagctgagttttattttcccttgttaacattttgggtccaatagtatattttgttctttgttaaagtttatttatacttata |
100 |
Q |
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| T |
42213011 |
catcggtcatcatggacttagctgagttttattttcccttgttaacattttgggtccaatagtatattttgttctttgttaaagtttatttatacttata |
42213110 |
T |
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| Q |
101 |
tgagtgataatattaatatgtttcttatttttcattaattattgttctgctcctccaagatggtagctagtaaatgtcttgtcttgagaga--------- |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213111 |
tgagtgataatattaatatgtttcttatttttcattaattattgttctgctcctccaagatggtagctagtaaatgtcttgtcttgagagattttcattt |
42213210 |
T |
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| Q |
192 |
--ttttctttaatttattgtatcaaattggtagttat |
226 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42213211 |
gtttttctttaatttattgtatcaaattggtagttat |
42213247 |
T |
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