View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_55 (Length: 240)
Name: NF4030_low_55
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42934552 - 42934786
Alignment:
| Q |
1 |
atgcaaataattgaatctaacataattactctaattgtccatatccacaaataaaaccaatcacaactctagttttaggattctgtacctctgctaatat |
100 |
Q |
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| T |
42934552 |
atgcaaataatggaatctaacataattactctaattgtccatatccacaaataaaaccaatcacaactctagttttaggattctgtacctctgctaatat |
42934651 |
T |
|
| Q |
101 |
cccctcaaaagcacagatttaaccaacccttcaattaaaaatgcaaatatcctaagatagattttttaccattaattttaacattttctgatatgatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934652 |
cccctcaaaagcacagatttaaccaacccttcaattaaaaatgcaaatatcctaagatagattttttaccattaattttaacattttctgatatgatatt |
42934751 |
T |
|
| Q |
201 |
ctactgaatatgcagtgatggtgatggtgatgatg |
235 |
Q |
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|| ||||||||||||||||||||||| |||||||| |
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| T |
42934752 |
ctgctgaatatgcagtgatggtgatgatgatgatg |
42934786 |
T |
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