View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_56 (Length: 237)
Name: NF4030_low_56
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37498916 - 37499135
Alignment:
| Q |
1 |
tttcaatggtagttacagattacagcatctgtcgtgacaaaggttgattttgtaagaatggattctgtaaaatttattttagctaaaagtgcattgaatg |
100 |
Q |
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| T |
37498916 |
tttcaatggtagttacagattacagcatctgtcgtgacaaaggttgattttgtaagaatggattctgtaaaatttattttagctaaaagtgcattgaatg |
37499015 |
T |
|
| Q |
101 |
taattcttgtaaaagtgagttgaacattggagacaaaagctccaaattctagcttcaagttacttgacaacatccaaacatgtaaaactcgactctacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37499016 |
taattcttgtaaaagtgagttgaacattggagacaaaagctccaaattctagcttcaagttacttgacaacatccaaacatgtaaaactcgactctacac |
37499115 |
T |
|
| Q |
201 |
ccctggaatccattttgtgt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37499116 |
ccctggaatccattttgtgt |
37499135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 7667644 - 7667616
Alignment:
| Q |
134 |
caaaagctccaaattctagcttcaagtta |
162 |
Q |
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| T |
7667644 |
caaaagctccaaattctagcttcaagtta |
7667616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 10859889 - 10859917
Alignment:
| Q |
134 |
caaaagctccaaattctagcttcaagtta |
162 |
Q |
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|
| T |
10859889 |
caaaagctccaaattctagcttcaagtta |
10859917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 16898164 - 16898132
Alignment:
| Q |
130 |
gagacaaaagctccaaattctagcttcaagtta |
162 |
Q |
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|||||||||| |||||||||||||||||||||| |
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|
| T |
16898164 |
gagacaaaagttccaaattctagcttcaagtta |
16898132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 6767709 - 6767681
Alignment:
| Q |
134 |
caaaagctccaaattctagcttcaagtta |
162 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
6767709 |
caaaagctccaaattctagcttcaagtta |
6767681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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