View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4030_low_6 (Length: 576)
Name: NF4030_low_6
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 560
Target Start/End: Complemental strand, 1481122 - 1480564
Alignment:
| Q |
10 |
acatcatcacatacttaatactccatagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttatactaaactcaagaaa |
109 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1481122 |
acattatcacatacttaacactccgtagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttattctaaactcaagaaa |
1481023 |
T |
|
| Q |
110 |
ggctaaaagtctgtttttcacgagctttcttatgctaaaatagaagcctcaatacacaaacaaaattacaccatcaatctcctaaagctatcaagcatcc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481022 |
ggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctcctaaagctatcaagcatcc |
1480923 |
T |
|
| Q |
210 |
aaacaatgatgaaagaaatagtagcgtttcattgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1480922 |
aaacaatgatgaaagaaatagtagcgtttcaatgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccc |
1480823 |
T |
|
| Q |
310 |
tacatatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1480822 |
tacatatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtc |
1480723 |
T |
|
| Q |
410 |
a--------ctttcactgaactaagcttaatgactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctg |
501 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1480722 |
actttggcactttcactgaactaagcttaatgactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctg |
1480623 |
T |
|
| Q |
502 |
aactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaacc |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1480622 |
aactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaacc |
1480564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 43061473 - 43061410
Alignment:
| Q |
238 |
tcattgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg |
301 |
Q |
| |
|
|||||||| || |||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43061473 |
tcattgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg |
43061410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 535
Target Start/End: Complemental strand, 43060986 - 43060938
Alignment:
| Q |
487 |
caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaa |
535 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
43060986 |
caaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaa |
43060938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 242 - 560
Target Start/End: Complemental strand, 19180694 - 19180368
Alignment:
| Q |
242 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19180694 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
19180595 |
T |
|
| Q |
342 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtca--------ctttcactgaactaagcttaatg |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
19180594 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg |
19180495 |
T |
|
| Q |
434 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19180494 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
19180395 |
T |
|
| Q |
534 |
aaattaagcataaaatcaccttgaacc |
560 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19180394 |
aaattaagcataaaatcaccttgaacc |
19180368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 313 - 448
Target Start/End: Original strand, 42801375 - 42801519
Alignment:
| Q |
313 |
atatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgt--- |
408 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
42801375 |
atatttaagtgagttgggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcac |
42801474 |
T |
|
| Q |
409 |
-----cactttcactgaactaagcttaatgactcagatgttcact |
448 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
42801475 |
tttggcactttcactaaactgagcttaatgactcagatgttcact |
42801519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 560
Target Start/End: Original strand, 49233905 - 49233976
Alignment:
| Q |
489 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaacc |
560 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| |||||||||| |
|
|
| T |
49233905 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaacc |
49233976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 560
Target Start/End: Original strand, 49234476 - 49234548
Alignment:
| Q |
489 |
aaaaccagctctgaactttgca-gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaacc |
560 |
Q |
| |
|
|||||||||||| || | |||| |||||| ||||| | || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
49234476 |
aaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaacc |
49234548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 560
Target Start/End: Complemental strand, 24455893 - 24455822
Alignment:
| Q |
489 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaacc |
560 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| |||||||||| |
|
|
| T |
24455893 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaacc |
24455822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University