View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4030_low_60 (Length: 230)

Name: NF4030_low_60
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4030_low_60
NF4030_low_60
[»] chr3 (41 HSPs)
chr3 (17-212)||(43401652-43401847)
chr3 (17-212)||(49199320-49199515)
chr3 (17-212)||(43403595-43403790)
chr3 (19-126)||(36019052-36019159)
chr3 (17-126)||(46860678-46860787)
chr3 (19-212)||(55301827-55302018)
chr3 (17-212)||(41819380-41819569)
chr3 (17-212)||(6095455-6095645)
chr3 (80-212)||(40913415-40913546)
chr3 (156-212)||(801214-801270)
chr3 (156-212)||(7779994-7780050)
chr3 (37-123)||(5433818-5433905)
chr3 (19-105)||(54593931-54594017)
chr3 (159-212)||(3617572-3617625)
chr3 (40-212)||(30236247-30236415)
chr3 (156-212)||(45283108-45283164)
chr3 (162-212)||(5258140-5258190)
chr3 (159-209)||(6716624-6716674)
chr3 (162-212)||(7762387-7762437)
chr3 (162-212)||(9581404-9581454)
chr3 (159-209)||(10209300-10209350)
chr3 (162-212)||(23197935-23197985)
chr3 (162-212)||(23200134-23200184)
chr3 (159-209)||(54635249-54635299)
chr3 (159-212)||(25637549-25637602)
chr3 (41-126)||(31340101-31340186)
chr3 (156-212)||(9636116-9636172)
chr3 (159-209)||(4598516-4598566)
chr3 (162-212)||(5260319-5260369)
chr3 (41-122)||(5270580-5270662)
chr3 (159-209)||(10056344-10056394)
chr3 (159-209)||(10058566-10058616)
chr3 (159-209)||(10060788-10060838)
chr3 (159-209)||(10063010-10063060)
chr3 (159-209)||(10065232-10065282)
chr3 (159-209)||(10211520-10211570)
chr3 (162-212)||(19683885-19683935)
chr3 (162-212)||(34491334-34491383)
chr3 (162-212)||(37408580-37408630)
chr3 (162-212)||(45095285-45095335)
chr3 (44-126)||(47304461-47304543)
[»] chr4 (32 HSPs)
chr4 (17-212)||(2209836-2210031)
chr4 (17-126)||(41964617-41964726)
chr4 (17-212)||(379502-379693)
chr4 (41-212)||(12073514-12073681)
chr4 (86-212)||(50262621-50262747)
chr4 (37-200)||(12119673-12119844)
chr4 (17-126)||(40632648-40632758)
chr4 (40-126)||(55085320-55085406)
chr4 (19-126)||(46703752-46703860)
chr4 (37-126)||(33990049-33990138)
chr4 (19-212)||(50673705-50673893)
chr4 (82-212)||(8648261-8648386)
chr4 (91-212)||(46703623-46703740)
chr4 (156-212)||(31495306-31495362)
chr4 (82-212)||(8665530-8665655)
chr4 (55-126)||(26699335-26699406)
chr4 (162-212)||(48143165-48143215)
chr4 (159-212)||(8393516-8393569)
chr4 (159-212)||(8395725-8395778)
chr4 (80-126)||(6656159-6656205)
chr4 (162-212)||(13992289-13992339)
chr4 (40-126)||(35662644-35662730)
chr4 (162-212)||(56178633-56178683)
chr4 (40-105)||(21688470-21688535)
chr4 (86-126)||(41639629-41639669)
chr4 (63-114)||(6719771-6719822)
chr4 (159-209)||(5136190-5136240)
chr4 (159-209)||(5138415-5138465)
chr4 (162-212)||(5370079-5370129)
chr4 (80-126)||(27416884-27416930)
chr4 (166-212)||(29999806-29999852)
chr4 (37-126)||(32091645-32091733)
[»] chr6 (35 HSPs)
chr6 (17-212)||(3808559-3808754)
chr6 (17-212)||(26800709-26800900)
chr6 (17-126)||(17758228-17758337)
chr6 (19-212)||(17763112-17763302)
chr6 (20-212)||(22424682-22424872)
chr6 (17-126)||(2972791-2972901)
chr6 (40-212)||(21589053-21589220)
chr6 (20-105)||(26829979-26830064)
chr6 (80-212)||(603003-603134)
chr6 (19-212)||(5043749-5043939)
chr6 (156-212)||(2171522-2171578)
chr6 (156-212)||(3072749-3072805)
chr6 (159-212)||(412224-412277)
chr6 (159-212)||(6097444-6097497)
chr6 (159-212)||(25421428-25421481)
chr6 (162-212)||(16452325-16452375)
chr6 (159-209)||(16578511-16578561)
chr6 (159-209)||(16616819-16616869)
chr6 (159-209)||(16653237-16653287)
chr6 (159-209)||(34167205-34167255)
chr6 (159-212)||(6027369-6027422)
chr6 (156-209)||(27647985-27648038)
chr6 (162-212)||(5406196-5406246)
chr6 (162-212)||(5409066-5409115)
chr6 (162-212)||(5410521-5410571)
chr6 (162-212)||(5413391-5413440)
chr6 (159-209)||(13154040-13154090)
chr6 (159-209)||(16554994-16555044)
chr6 (159-209)||(16631550-16631600)
chr6 (162-212)||(30834532-30834582)
chr6 (162-212)||(31404671-31404721)
chr6 (162-212)||(33160348-33160398)
chr6 (159-209)||(33342098-33342148)
chr6 (159-209)||(34164983-34165033)
chr6 (54-114)||(9572808-9572868)
[»] chr1 (29 HSPs)
chr1 (17-212)||(37032924-37033118)
chr1 (19-212)||(29136369-29136558)
chr1 (27-212)||(47115294-47115475)
chr1 (19-212)||(28242426-28242616)
chr1 (40-212)||(42297850-42298021)
chr1 (41-212)||(47255216-47255386)
chr1 (24-105)||(11348925-11349006)
chr1 (17-126)||(37876621-37876731)
chr1 (41-212)||(13548879-13549046)
chr1 (40-212)||(31925585-31925753)
chr1 (19-212)||(37168420-37168606)
chr1 (156-212)||(9987323-9987379)
chr1 (156-212)||(20622227-20622283)
chr1 (156-212)||(40282499-40282555)
chr1 (159-212)||(44203754-44203807)
chr1 (156-212)||(9036538-9036594)
chr1 (162-212)||(8550783-8550833)
chr1 (162-212)||(13316348-13316398)
chr1 (84-126)||(19754697-19754739)
chr1 (19-126)||(34603766-34603874)
chr1 (156-209)||(21054083-21054136)
chr1 (37-123)||(9109292-9109379)
chr1 (162-212)||(3189452-3189502)
chr1 (162-212)||(3198269-3198319)
chr1 (162-212)||(3207108-3207158)
chr1 (80-126)||(19752886-19752932)
chr1 (162-212)||(51765519-51765569)
chr1 (53-126)||(6808657-6808730)
chr1 (32-126)||(7482100-7482195)
[»] chr7 (30 HSPs)
chr7 (19-212)||(2390404-2390596)
chr7 (17-212)||(8359174-8359362)
chr7 (19-126)||(3259198-3259305)
chr7 (19-212)||(34310571-34310762)
chr7 (30-126)||(29608940-29609037)
chr7 (19-126)||(4508563-4508671)
chr7 (17-126)||(4510403-4510513)
chr7 (17-126)||(4512245-4512355)
chr7 (159-212)||(32060315-32060368)
chr7 (156-212)||(35854036-35854092)
chr7 (156-211)||(24789964-24790019)
chr7 (159-212)||(18388753-18388806)
chr7 (159-212)||(18392189-18392242)
chr7 (57-126)||(22328285-22328354)
chr7 (156-212)||(25766950-25767006)
chr7 (159-209)||(6592333-6592383)
chr7 (159-209)||(6594551-6594601)
chr7 (162-212)||(23555162-23555212)
chr7 (162-212)||(29991175-29991225)
chr7 (162-212)||(39731491-39731541)
chr7 (159-212)||(20344019-20344071)
chr7 (156-212)||(1560656-1560712)
chr7 (156-212)||(43504144-43504200)
chr7 (63-114)||(8452101-8452152)
chr7 (44-126)||(2360859-2360941)
chr7 (162-212)||(4178895-4178945)
chr7 (162-212)||(25615975-25616025)
chr7 (38-126)||(1360048-1360137)
chr7 (156-212)||(22270095-22270149)
chr7 (156-212)||(48408926-48408982)
[»] scaffold0176 (1 HSPs)
scaffold0176 (18-212)||(17859-18050)
[»] chr8 (20 HSPs)
chr8 (23-211)||(11384108-11384291)
chr8 (19-125)||(40328980-40329086)
chr8 (17-126)||(3772395-3772504)
chr8 (19-105)||(18655627-18655713)
chr8 (41-126)||(4283727-4283812)
chr8 (37-113)||(10240341-10240417)
chr8 (156-212)||(2627858-2627914)
chr8 (162-212)||(17982775-17982825)
chr8 (159-209)||(25690079-25690129)
chr8 (162-212)||(31218379-31218429)
chr8 (162-212)||(42498316-42498366)
chr8 (159-212)||(3439625-3439678)
chr8 (86-126)||(2999727-2999767)
chr8 (80-126)||(10930116-10930162)
chr8 (162-212)||(34254327-34254377)
chr8 (162-212)||(34256503-34256553)
chr8 (80-126)||(40221948-40221994)
chr8 (159-209)||(42575317-42575367)
chr8 (162-212)||(44303977-44304027)
chr8 (163-212)||(1746216-1746265)
[»] chr2 (21 HSPs)
chr2 (17-124)||(42287966-42288073)
chr2 (38-126)||(7451322-7451410)
chr2 (19-126)||(17450780-17450884)
chr2 (67-212)||(24398180-24398324)
chr2 (37-212)||(33648294-33648465)
chr2 (156-212)||(6266813-6266869)
chr2 (17-120)||(45727136-45727240)
chr2 (159-212)||(12647379-12647432)
chr2 (159-212)||(32289686-32289739)
chr2 (162-212)||(4503129-4503179)
chr2 (162-212)||(36988072-36988122)
chr2 (162-212)||(45099876-45099926)
chr2 (159-212)||(13656025-13656078)
chr2 (86-210)||(35446809-35446928)
chr2 (162-212)||(2334414-2334464)
chr2 (162-212)||(4484326-4484376)
chr2 (162-212)||(6595002-6595052)
chr2 (162-212)||(30833468-30833518)
chr2 (162-212)||(36205661-36205711)
chr2 (37-113)||(42261359-42261436)
chr2 (180-212)||(28672053-28672085)
[»] scaffold0236 (1 HSPs)
scaffold0236 (19-126)||(10693-10800)
[»] chr5 (29 HSPs)
chr5 (37-126)||(16640814-16640903)
chr5 (19-111)||(40751195-40751284)
chr5 (19-111)||(40763200-40763289)
chr5 (44-212)||(27637495-27637659)
chr5 (156-212)||(10593380-10593436)
chr5 (156-212)||(22536280-22536336)
chr5 (156-212)||(29751150-29751206)
chr5 (18-105)||(213693-213780)
chr5 (162-212)||(13343182-13343232)
chr5 (159-212)||(9789217-9789270)
chr5 (159-212)||(16409597-16409650)
chr5 (159-212)||(25078243-25078296)
chr5 (159-212)||(25136212-25136265)
chr5 (159-212)||(26170884-26170937)
chr5 (159-212)||(26178004-26178057)
chr5 (156-212)||(29720486-29720542)
chr5 (156-212)||(29722646-29722702)
chr5 (37-212)||(316885-317060)
chr5 (162-212)||(37439263-37439313)
chr5 (159-209)||(40380216-40380266)
chr5 (159-209)||(40382427-40382477)
chr5 (175-212)||(4160721-4160758)
chr5 (159-212)||(18441641-18441694)
chr5 (159-209)||(16544534-16544584)
chr5 (159-209)||(16546756-16546806)
chr5 (162-212)||(25412882-25412932)
chr5 (80-126)||(40147464-40147510)
chr5 (164-212)||(13239873-13239921)
chr5 (164-212)||(28278438-28278485)
[»] scaffold0286 (1 HSPs)
scaffold0286 (156-212)||(11679-11735)
[»] scaffold1519 (1 HSPs)
scaffold1519 (162-212)||(1037-1087)
[»] scaffold0565 (1 HSPs)
scaffold0565 (162-212)||(2600-2650)
[»] scaffold0491 (2 HSPs)
scaffold0491 (162-212)||(8731-8781)
scaffold0491 (162-212)||(11157-11207)
[»] scaffold0466 (1 HSPs)
scaffold0466 (64-126)||(7530-7592)
[»] scaffold0674 (1 HSPs)
scaffold0674 (159-212)||(3719-3772)
[»] scaffold0002 (2 HSPs)
scaffold0002 (164-212)||(434655-434703)
scaffold0002 (37-113)||(490194-490271)
[»] scaffold0197 (1 HSPs)
scaffold0197 (57-126)||(1291-1360)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 43401652 - 43401847
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43401652 ggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaatcacaatctaaccaaagga 43401751  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  43401752 taaacaagataaagagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcggtccaaccatgacctactctggaggagagatt 43401847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 49199320 - 49199515
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49199320 ggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaagga 49199419  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  49199420 taaacaagataaagagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcggtccaaccatgacctagtctggaggagagatt 49199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 43403595 - 43403790
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43403595 ggcaaccaataaccaaatgtaaataaccacaagcaataataacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaagga 43403694  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       || |||||||||| ||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  43403695 taaacaagataaagagagtggagaaaaataaacaacaacatcaagagattgttcacccagttcggtccaaccatgacctactctggaggagagatt 43403790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 36019159 - 36019052
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  36019159 caaccaataatcaaatgtaaattaccacaagcaacaataacaatctagatctaatctagaaaacaagtgtttaacaaaaccacaatctaaccaaaggata 36019060  T
Q  119 aacaagat 126  Q
    ||||||||    
T  36019059 aacaagat 36019052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 46860787 - 46860678
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||  |||| |||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  46860787 ggcaaccaataaccaaatgtaaataaccacaaacaacaacaacaatatagacctaatctataaaccaagtgcatagcaaaaccacaatctaaccaaagga 46860688  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  46860687 taaacaagat 46860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 55301827 - 55302018
Alignment:
Q  19 caaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaa-caaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||| |||||||  ||||||||||    
T  55301827 caaccaataaccaaatgtgaataaaccacaagcaataaaaacaatctagatctaatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga 55301926  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| |||||   ||| ||||| || |||| | ||||||||||||| |||||||| |||||||||| |||||||||||||    
T  55301927 taaacaagataaagagagtaaagaaa---agataacaacactaaga-aatgttcaccaagttcggtccaacaatgacctactatggaggagagatt 55302018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 41819380 - 41819569
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    ||||||||| || |||| ||||||   ||||||||| ||||||||  |||| ||| || | ||| ||| |||||||||||||||||||||||||||||||    
T  41819380 ggcaaccaacaaccaaaagtaaat---cacaagcaacaacaacaatatagacctagtccataaaccaagtgcatagcaaaaccacaatctaaccaaagga 41819476  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||||||||||  | | ||||| ||||| | | |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  41819477 taaacaagataaagaaagtagagaaaa--aaataacaacaccaata-aatgttcacccagtttggtccaacaatgacctactctggaggagagatt 41819569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 6095455 - 6095645
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||| |||  || || ||||||||||||||||| |||||| | |    
T  6095455 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaacgaagtgtatagcaaaaccacaatccaaccaaggca 6095554  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| |||||   ||| ||||| ||||||| | |||||||  |||| ||||||| | |||||||||||||||||||||||    
T  6095555 taaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacacagttcggtccaa-cttgacctactctggaggagagatt 6095645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 40913546 - 40913415
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagttt 179  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| || |||||||||||||| ||| ||||     
T  40913546 aacaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagattagagaaaaatagacaataacaccaagagattgttgacccagttc 40913447  T
Q  180 ggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||| | ||||||| ||||| |||||||||    
T  40913446 ggtccaa-cttgacctaatctgggggagagatt 40913415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 801270 - 801214
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  801270 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 7779994 - 7780050
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| | |||||||||| | |||||||||||||||||||||||    
T  7779994 accaagagattgttcacccactttggtccaaacttgacctactctggaggagagatt 7780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 5433818 - 5433905
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatc-tagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaa 123  Q
    |||||||||||||||| |||||||| ||||  |||||| || ||  |||||| ||||||||||||||||| |||||||| ||||||||    
T  5433818 aaataaccacaagcaacaacaacaatctagtcctaatcatataagtcaaatgtatagcaaaaccacaatcgaaccaaagaataaacaa 5433905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 54594017 - 54593931
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||  ||||  || |||| ||| ||  ||||||||||||||||||||    
T  54594017 caaccaataaccaaatataaataaccacaagcaataacaagaatatagacatagtctataaaccatgtgcatagcaaaaccacaatc 54593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 3617625 - 3617572
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  3617625 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 3617572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 30236415 - 30236247
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagag 139  Q
    ||||||||||||| ||||||||  |||| ||| |||| ||| ||| |||||| ||||| ||||||| |||||| | |||||||||||       ||| ||    
T  30236415 taaccacaagcaacaacaacaatatagacctagtctataaaccaagtgcataacaaaaacacaatccaaccaaggtataaacaagataaagagagtaaag 30236316  T
Q  140 aaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||   ||| ||||| ||||||| |||||| ||| |||| ||||||| | ||||||| ||||| |||||||||    
T  30236315 aaa---agataacaacaccaagaaattgttgacctagttcggtccaa-cttgacctaatctgggggagagatt 30236247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 45283164 - 45283108
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||  |||| ||||||| | |||||||||||||||||||||||    
T  45283164 accaagagattgttcactcagttcggtccaaacttgacctactctggaggagagatt 45283108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5258140 - 5258190
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||||| ||||||| | ||||||||||||||| |||||||    
T  5258140 agattgttcaccaagttcggtccaaacttgacctactctggagaagagatt 5258190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 6716674 - 6716624
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  6716674 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 6716624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 7762437 - 7762387
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  7762437 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 7762387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 9581454 - 9581404
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  9581454 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 9581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10209350 - 10209300
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||||||||||| | ||||||||||||||||||||    
T  10209350 aagagattggtcacccagtttggtccaaacttgacctactctggaggagag 10209300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 23197935 - 23197985
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  23197935 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 23197985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 23200134 - 23200184
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  23200134 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 23200184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 54635299 - 54635249
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  54635299 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 54635249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 25637602 - 25637549
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||| ||||| |||| ||||||| | |||||||||||||||||||||||    
T  25637602 aagagattggtcacccagttcggtccaaacttgacctactctggaggagagatt 25637549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 31340101 - 31340186
Alignment:
Q  41 aaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||| ||||| ||  |||| ||| |||| ||| ||| |||||||||||||||||||| ||| || | |||||||||||    
T  31340101 aaccacaagcaacaacaataatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagat 31340186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 9636116 - 9636172
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||| ||| | ||||||||| |||||||||||||    
T  9636116 accaagagattgttcacccagttcggttcaaacttgacctactttggaggagagatt 9636172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 4598516 - 4598566
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  4598516 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 4598566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5260319 - 5260369
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||||| ||||||| | ||||||||| ||||| |||||||    
T  5260319 agattgttcaccaagttcggtccaaacttgacctactttggagaagagatt 5260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 5270662 - 5270580
Alignment:
Q  41 aaccacaagcaataacaaca-acctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaaca 122  Q
    |||||||||||| ||||| | | ||||||||||||||| || ||| || |  |||||||||||||| |||||||| |||||||    
T  5270662 aaccacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgcaaaaccacaatcgaaccaaagaataaaca 5270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10056394 - 10056344
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10056394 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10056344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10058616 - 10058566
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10058616 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10060838 - 10060788
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10060838 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10060788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10063060 - 10063010
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10063060 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10063010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10065282 - 10065232
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10065282 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10065232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 10211570 - 10211520
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  10211570 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 10211520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 19683885 - 19683935
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | ||||||||| |||||||||||||    
T  19683885 agattgttcacccagttcggtccaaacttgacctactatggaggagagatt 19683935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 34491383 - 34491334
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||||||||    
T  34491383 agattgttcacccagttcggtccaact-tgacctactctggaggagagatt 34491334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 37408630 - 37408580
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| | ||||| | |||||||||||||||||||||||    
T  37408630 agattgttcacccagttcgatccaaacttgacctactctggaggagagatt 37408580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 45095335 - 45095285
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  45095335 agattgttcacccagttcggtccaaacttgacctactctagaggagagatt 45095285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 47304543 - 47304461
Alignment:
Q  44 cacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||| ||||| ||  |||| ||| |||| ||| ||| |||||||||||||||||||| ||| || | |||||||||||    
T  47304543 cacaagcaacaacaataatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagat 47304461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 2210031 - 2209836
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  2210031 ggcaaccaataaccaaatgtaaataaccacaaacaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaatga 2209932  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  2209931 taaacaagataaagagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcggtccaaccatgacctactctggaggagagatt 2209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 41964726 - 41964617
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41964726 ggcaaccaacaatcaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaagga 41964627  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  41964626 taaacaagat 41964617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 379693 - 379502
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  |||| ||| |||| ||| ||| |||||| ||||||||||||||||||||||||    
T  379693 ggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaaccaagtgcataacaaaaccacaatctaaccaaagga 379594  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| |||||   ||| ||||| ||||||| | |||||| | |||| |||||||| ||||||||||||||||||||||||    
T  379593 taaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcatccagttcggtccaacaatgacctactctggaggagagatt 379502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 12073681 - 12073514
Alignment:
Q  41 aaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagaga 140  Q
    |||||||||||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||       ||| |||    
T  12073681 aaccacaagcaacaacaacaatctagatctaatctagaaaccaagtgcataacaaaaccacaatctaaccaaagaataaacaagataaagagagtaaaga 12073582  T
Q  141 aaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||   ||| ||||| ||||||| | |||||||| |||| |||||||| ||||||||||||||| ||||||||    
T  12073581 aa---agataacaacaccaaga-aatgttcacctagttcggtccaacaatgacctactctggaagagagatt 12073514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 86 - 212
Target Start/End: Original strand, 50262621 - 50262747
Alignment:
Q  86 tgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtcca 185  Q
    ||||| |||||||||||||| ||  || | |||||||||||       ||||||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  50262621 tgcatggcaaaaccacaatccaagtaaggaataaacaagataaaaagagtagagaaaaatagacaacaacaccaagagattgttcacccagttcggtcca 50262720  T
Q  186 accatgacctactctggaggagagatt 212  Q
    || |||||||||||||||||| |||||    
T  50262721 acaatgacctactctggaggaaagatt 50262747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 12119844 - 12119673
Alignment:
Q  37 aaataaccacaagcaataacaacaac-------ctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnn 129  Q
    |||||||||||||||| |||||||||       ||||||||||||||||||  || ||||||||||||||||||||  |||||||  ||||||||||       
T  12119844 aaataaccacaagcaacaacaacaacaatcaatctagatctaatctagaaactaagtgcatagcaaaaccacaatcggaccaaagactaaacaagataaa 12119745  T
Q  130 nnnngtagag-aaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactct 200  Q
        |||||| |||||||||  |||| ||||||| |||||||||| |||| |||||||| ||||||||||||    
T  12119744 gagagtagagaaaaaatagatgacaacaccaagaaattgttcacctagttcggtccaacaatgacctactct 12119673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 40632758 - 40632648
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg 115  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||  |||| ||| |||| | | ||| ||||| |||||||||||||  |||||||||    
T  40632758 ggcaaccaataaccaaatgtaaataaaccacaagcaataacaacaatatagacctagtctatataccaagtgcatggcaaaaccacaattcaaccaaagg 40632659  T
Q  116 ataaacaagat 126  Q
    |||||||||||    
T  40632658 ataaacaagat 40632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 55085320 - 55085406
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||| ||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||| |||||| | |||||||||||    
T  55085320 taactacaagcaataacaacaatctagatctaatttagaaaccaagtgcatagcaaaaccacaatccaaccaaggaataaacaagat 55085406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 46703860 - 46703752
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaaccta--gatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||  ||  || ||| |||| ||  ||| |||||||||||||||||||||||||||||||    
T  46703860 caaccaataaccaaatgtaaataacctcaagcaacaacaacaatatatagacctattctataat-caagtgcatagcaaaaccacaatctaaccaaagga 46703762  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  46703761 taaacaagat 46703752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 33990138 - 33990049
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||| ||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| |||  |||||||| |||||||||||    
T  33990138 aaataaacacaagcaacaacaacaatctagatctaatctagaaaccaagtgcatagcaaatccagaattgaaccaaagaataaacaagat 33990049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 50673705 - 50673893
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaat-ctaaccaaaggat 117  Q
    |||||||||| ||||||||||| |||| |||||||||||||||  |||||||| ||||  || ||| ||||||||||||||||||| | || ||| | ||    
T  50673705 caaccaataaccaaatgtaaatcaccataagcaataacaacaatatagatctagtcta-taatcaagtgcatagcaaaaccacaatccaaagcaaggaat 50673803  T
Q  118 aaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  50673804 aaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacctagttcggtccaa-cttgacctactctggaggagagatt 50673893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 8648386 - 8648261
Alignment:
Q  82 caaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttgg 181  Q
    |||||||||||||||||||||||| |||||| | |||||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| |||||||    
T  8648386 caaatgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagtttgg 8648291  T
Q  182 tccaaccatgacctactctggaggagagatt 212  Q
    ||||| | |||||||||||||||||||||||    
T  8648290 tccaa-cttgacctactctggaggagagatt 8648261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 46703740 - 46703623
Alignment:
Q  91 agcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccat 190  Q
    ||||||||||||||||||||||| ||||||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| | || |||||||| ||    
T  46703740 agcaaaaccacaatctaaccaaatgataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccaattcggtccaacaat 46703645  T
Q  191 gacctactctggaggagagatt 212  Q
    ||||||||||||||||||||||    
T  46703644 gacctactctggaggagagatt 46703623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 31495306 - 31495362
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  31495306 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 31495362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 8665655 - 8665530
Alignment:
Q  82 caaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttgg 181  Q
    |||||||||||||||||||||||| |||||| | |||||||||||       ||| |||||   ||| ||||| ||||||| | ||| |||| |||||||    
T  8665655 caaatgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgtacacctagtttgg 8665560  T
Q  182 tccaaccatgacctactctggaggagagatt 212  Q
    ||||| | |||||||||||||||||||||||    
T  8665559 tccaa-cttgacctactctggaggagagatt 8665530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 26699335 - 26699406
Alignment:
Q  55 acaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||| |||||||||||||||||  ||| ||||||||||||||| |||  |||||||| |||||||||||    
T  26699335 acaacaatctagatctaatctagaatccaagtgcatagcaaaaccataattgaaccaaagaataaacaagat 26699406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 48143215 - 48143165
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  48143215 agattgttcacccagtttggtccaaacttgacctactctggaggagagatt 48143165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 8393569 - 8393516
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  8393569 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 8393516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 8395778 - 8395725
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  8395778 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 8395725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 6656205 - 6656159
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  6656205 aacaagtgcatagcaaaaccacaatccaacaaaaggataaacaagat 6656159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 13992289 - 13992339
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  13992289 agattgttcacctagttcggtccaaacttgacctactctggaggagagatt 13992339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 35662730 - 35662644
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||| |||||| ||||||||  ||||  || |||| ||| ||| |||||||||||||||||||| |||||| | |||||||||||    
T  35662730 taaccataagcaacaacaacaatatagacatagtctataaaccaagtgcatagcaaaaccacaatccaaccaaggaataaacaagat 35662644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 56178633 - 56178683
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  56178633 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 56178683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 21688535 - 21688470
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    ||||||||||||| ||||| ||  |||||||| |||| ||| |||||||||| |||||||||||||    
T  21688535 taaccacaagcaacaacaataatatagatctagtctataaatcaaatgcataacaaaaccacaatc 21688470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 41639669 - 41639629
Alignment:
Q  86 tgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  41639669 tgcatagcaaaaccacaattcaaccaaaggataaacaagat 41639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 6719822 - 6719771
Alignment:
Q  63 ctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaag 114  Q
    |||||||||||||||||| ||| |||| ||||||||||||||  ||||||||    
T  6719822 ctagatctaatctagaaaccaagtgcaaagcaaaaccacaataaaaccaaag 6719771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 5136240 - 5136190
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  5136240 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 5136190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 5138465 - 5138415
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  5138465 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 5138415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5370079 - 5370129
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||  |||| ||||||| | |||||||||||||||||||||||    
T  5370079 agattgttcactcagttcggtccaaacttgacctactctggaggagagatt 5370129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 27416884 - 27416930
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||||||    
T  27416884 aacaagtgcatggcaaaaccacaatccaaccaaagaataaacaagat 27416930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 29999806 - 29999852
Alignment:
Q  166 tgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29999806 tgttcacccagttcggtccaaacttgacctactctggaggagagatt 29999852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 32091733 - 32091645
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||| | ||| |||||||||||  |||||||||||||| |||||| || | || |||||||||||  ||| |||| |||||||||||    
T  32091733 aaataactataagtaataacaacaatttagatctaatctagcaaacaagtgtaaag-aaaaccacaattgaactaaagaataaacaagat 32091645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 3808559 - 3808754
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3808559 ggcaaccaataatcaaatgtaaataaccaaaagcaatagcaacaatctagatctaatctagaaaacaaatgcatagcaaaaccataatctaaccaaagga 3808658  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       |||||||||||||||||||||  ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  3808659 taaacaagataaagagagtagagaaaaatagacaacaaccccaagagattgttcacctagttcggtccaatcatgacctactctggaggagagatt 3808754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 26800900 - 26800709
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||    
T  26800900 ggcaaccaataaccaaatgtaaattaccacaagcaataacaacaatctagatctagtctagaaaacaagtgcatagcaaaaccacaatctaaccaaaaga 26800801  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       |||||||||   ||| ||||| ||||||| | |||||| | |||| |||||||| ||||||||||||||||||||||||    
T  26800800 taaacaagataaaaagagtagagaaa---agataacaacaccaaga-aatgttcatccagttcggtccaacaatgacctactctggaggagagatt 26800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 17758337 - 17758228
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17758337 ggcaaccaataaccaaatgtaaataaccgcaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaagga 17758238  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  17758237 taaacaagat 17758228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 17763302 - 17763112
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||     
T  17763302 caaccaataaccaaatgtaaataatcacaaacaataacaacaatctagatctaatctagataacaagtgcatagcaaaactacaatctaaccaaaggatg 17763203  T
Q  119 aacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||       ||  | || || ||| ||||| ||||||| | |||||||| |||| ||||||| | ||| |||||||||||||||||||    
T  17763202 aacaagataaagagagt--aaaagaaaagataacaacaccaaga-aatgttcacctagttcggtccaaacttgatctactctggaggagagatt 17763112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 22424682 - 22424872
Alignment:
Q  20 aaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcat--agcaaaaccacaatctaaccaaaggat 117  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||| |||||  |  ||||||||||||||||| ||||||    
T  22424682 aaccaataaccaaatgtaaataaccacaaacaacaacaacaatctagatctaatatagaaaccaagtgcattgaaaaaaaccacaatctaacctaaggat 22424781  T
Q  118 aaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||       |||||||||   ||| ||||| ||||||| | |||||||| |||  |||||||| ||||||||||||| ||||||||||    
T  22424782 aaacaagataaagagagtagagaaa---agataacaacaccaaga-aatgttcacccagtacggtccaacaatgacctactctgaaggagagatt 22424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 2972791 - 2972901
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatag-caaaaccacaatctaaccaaagg 115  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  |||| ||| |||| |||  || |||||||  |||||||||||||||||||| |    
T  2972791 ggcaaccaataatcaaatgtaaataaccacaaacaacaacaacaatatagacctagtctataaactaagtgcatagaaaaaaccacaatctaaccaaatg 2972890  T
Q  116 ataaacaagat 126  Q
    |||||||||||    
T  2972891 ataaacaagat 2972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 21589220 - 21589053
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagag 139  Q
    ||||||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||| ||| || | |||||||||||       ||| ||    
T  21589220 taaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaggaaagtaaag 21589121  T
Q  140 aaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||   ||| ||||| ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  21589120 aaa---agataacaacaccaaga-aatgttcacccagttcggtccaa-cttgacctactctggaggagagatt 21589053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 26829979 - 26830064
Alignment:
Q  20 aaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||  || | ||| |||| ||| ||| ||||||||||||||||||||    
T  26829979 aaccaataaccaaatgtaaataaccacaagcaataacaacaatataaacctagtctataaaccaagtgcatagcaaaaccacaatc 26830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 603003 - 603134
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagttt 179  Q
    ||||| ||||||| |||||||||||| |||||| | |||||||||||       ||||||||||||||||||||| | |||||||||||| ||| ||||     
T  603003 aacaagtgcatagtaaaaccacaatccaaccaaggcataaacaagataaagagagtagagaaaaatagacaacaacatcaagagattgttgacccagttc 603102  T
Q  180 ggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||| | ||||||| ||| | |||||||||    
T  603103 ggtccaa-cttgacctaatcttggggagagatt 603134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 5043939 - 5043749
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaaccta--gatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||  ||  || ||| |||| ||  ||| |||||||||||||||||||| ||||||   |    
T  5043939 caaccaataaccaaatgtaaataacctcaagcaacaacaacaatatatagacctattctataat-caagtgcatagcaaaaccacaatccaaccaagaaa 5043841  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| ||||||   || ||||| ||||||| || ||||||| |||| |||||||| |||||||||| |||||||||||||    
T  5043840 taaacaagataaagagagtaaagaaaa---gataacaacaccaagaaat-gttcacccagttcggtccaacaatgacctactatggaggagagatt 5043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 2171522 - 2171578
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  2171522 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 2171578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 3072749 - 3072805
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  3072749 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 3072805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 412277 - 412224
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  412277 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 412224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 6097444 - 6097497
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  6097444 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 6097497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 25421481 - 25421428
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  25421481 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 25421428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 16452325 - 16452375
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  16452325 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 16452375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 16578511 - 16578561
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  16578511 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 16578561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16616869 - 16616819
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  16616869 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 16616819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16653287 - 16653237
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  16653287 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 16653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 34167255 - 34167205
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  34167255 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 34167205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 6027422 - 6027369
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||| ||||||||||||||||||    
T  6027422 aagagattgttcacccagttcggtccaaacttgacatactctggaggagagatt 6027369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 27648038 - 27647985
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    |||||||||||||||||| |||| ||||||| | ||| ||||||||||||||||    
T  27648038 accaagagattgttcacccagttcggtccaaacttgatctactctggaggagag 27647985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5406196 - 5406246
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||| ||| | |||||||||||||||||||||||    
T  5406196 agattgttcacccagttcggttcaaacttgacctactctggaggagagatt 5406246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5409066 - 5409115
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||| ||| ||||||| | |||||||||||||||||||||||    
T  5409066 agattgttcacca-gttcggtccaaacttgacctactctggaggagagatt 5409115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5410521 - 5410571
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||| ||| | |||||||||||||||||||||||    
T  5410521 agattgttcacccagttcggttcaaacttgacctactctggaggagagatt 5410571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5413391 - 5413440
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||| ||| ||||||| | |||||||||||||||||||||||    
T  5413391 agattgttcacca-gttcggtccaaacttgacctactctggaggagagatt 5413440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 13154090 - 13154040
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  13154090 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 13154040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16555044 - 16554994
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||| ||||||||||    
T  16555044 aagagattgttcacccagttcggtccaaacttgacctactttggaggagag 16554994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16631600 - 16631550
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||| ||||||||||    
T  16631600 aagagattgttcacccagttcggtccaaacttgacctactttggaggagag 16631550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 30834532 - 30834582
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||| |||||| |||| ||||||| | |||||||||||||||||||||||    
T  30834532 agattattcacccagttcggtccaaacttgacctactctggaggagagatt 30834582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 31404671 - 31404721
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | || ||||||||||||||||||||    
T  31404671 agattgttcacccagttcggtccaaacttggcctactctggaggagagatt 31404721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 33160348 - 33160398
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||||||||||| | |||  ||||||||||||||||||    
T  33160348 agattgttcacccagtttggtccaaacttgaaatactctggaggagagatt 33160398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 33342098 - 33342148
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  33342098 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 33342148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 34165033 - 34164983
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  34165033 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 34164983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 9572868 - 9572808
Alignment:
Q  54 aacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaag 114  Q
    ||||| || |||||||||||||||||| ||| ||||||| || ||||||||| || |||||    
T  9572868 aacaataatctagatctaatctagaaaccaagtgcatagaaataccacaatcgaatcaaag 9572808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 37032924 - 37033118
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  37032924 ggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaatcacactctaaccaaagga 37033023  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       |||||| |||||||||||||| || || |||||||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  37033024 taaacaagataaagagagtagag-aaaatagacaacaacacgaatagattgttcacccagttcggtccaaccatgacctactatggagaagagatt 37033118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 29136558 - 29136369
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||||||||||||||||    
T  29136558 caaccaataaccaaatataactaaccacaagcaataacaacaaaatagacctagtctataaaccaagtgcatagcaaaaccacaatctaaccaaaggata 29136459  T
Q  119 aacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||       ||||||||||||||||| |   ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29136458 aacaagataaagagagtagagaaaaatagacagc---accaaga-aatgttcacctagttcggtccaaacttgacctactctggaggagagatt 29136369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 47115475 - 47115294
Alignment:
Q  27 aatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47115475 aatcaaatgtaaataatcacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaaccacaatctaacaaaaggataaacaagat 47115376  T
Q  127 nnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
           | |||||||   ||| ||||| | ||||| | |||||||| |||| |||||||| |||||||||||||||| |||||||    
T  47115375 aaaaagagcagagaaa---agataacaacatcaaga-aatgttcacccagttcggtccaacaatgacctactctggagcagagatt 47115294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 28242616 - 28242426
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagc-aaaaccacaatctaaccaaaggat 117  Q
    |||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| |||||| ||| || ||||| |||||||||||||||| ||| |||    
T  28242616 caaccaataaccaaatgtaaataacctcaagcaacaacaacaatctagatctaatttagaaaccaagtgaatagcaaaaaccacaatctaacaaaatgat 28242517  T
Q  118 aaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||       |||||||||   ||| ||||| ||||||| | |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  28242516 aaacaagataaagagagtagagaaa---agataacaacaccaaga-aatgttcacccagttcggtccaacaatgacctactctggaggagagatt 28242426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 42297850 - 42298021
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagag 139  Q
    |||||| |||||||||||| ||  || | | | |||| ||| ||| |||||||||||| ||||||| |||||||  |||||||||||       ||| ||    
T  42297850 taaccataagcaataacaataatatataccaagtctataaaccaagtgcatagcaaaatcacaatccaaccaaataataaacaagataaaaga-gtaaag 42297948  T
Q  140 aaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  42297949 aaaaatagacaacaacaccaagagattgttcacccagttcggtccaaccatgacctactctggaggagagatt 42298021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 47255216 - 47255386
Alignment:
Q  41 aaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagaga 140  Q
    ||||| |||||| ||||| ||  |||| ||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||       ||| |      
T  47255216 aaccataagcaacaacaataatatagacctagtctataaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaaag 47255315  T
Q  141 aaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||| | | ||||| ||||||| | |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  47255316 aaaaaaaataacaacaccaaga-aatgttcacccagttcggtccaacaatgacctactctggaggagagatt 47255386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 11349006 - 11348925
Alignment:
Q  24 aataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||| |||| ||| ||| ||||||||||||||||||||    
T  11349006 aataatcaaatgtaaataaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatc 11348925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 37876621 - 37876731
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg 115  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||   |||| ||| |||| ||| ||| ||||||| |||||||||||  ||||||| |    
T  37876621 ggcaaccaataaccaaatgtaaataaaccacaagcaaaaacaacactatagacctagtctataaaccaagtgcatagaaaaaccacaattcaaccaaatg 37876720  T
Q  116 ataaacaagat 126  Q
    |||||||||||    
T  37876721 ataaacaagat 37876731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 13548879 - 13549046
Alignment:
Q  41 aaccacaagcaataacaacaacctagatctaatctagaaaacaaa-tgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagag 139  Q
    |||||||||||| ||||| ||  |||| ||| |||| ||| |||| |||||||||||||||||||| |||||||| |||||||||||       ||| ||    
T  13548879 aaccacaagcaacaacaataatatagacctagtctataaaccaaagtgcatagcaaaaccacaatccaaccaaagaataaacaagataaagagagtaaag 13548978  T
Q  140 aaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||   ||| ||||| ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  13548979 aaa---agataacaacaccaaga-aatgttcacccagttcggtccaa-cttgacctactctggaggagagatt 13549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 31925585 - 31925753
Alignment:
Q  40 taaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataa-acaagatnnnnnnngtaga 138  Q
    ||||||||||||||||||| ||  |||| ||| |||| ||| ||| |||||||||||||||||||| |||||||| |||| |||||||       ||| |    
T  31925585 taaccacaagcaataacaataatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaaagaataatacaagataacgagagtaaa 31925684  T
Q  139 gaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||   | ||||| ||||||| | |||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  31925685 gaaaaa---ataacaacaccaaga-aatgttcacctagttcggtccaa-cttgacctactctagaggagagatt 31925753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 37168606 - 37168420
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||| ||||||||||||||| ||||||| ||||| |   |||| ||| |||| ||  ||| |||||||||||||||||||| |||||| | |||    
T  37168606 caaccaataaccaaatgtaaataacctcaagcaacaacaatata-tagacctagtctataat-caagtgcatagcaaaaccacaatcaaaccaaggaata 37168509  T
Q  119 aacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  37168508 aacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcggtccaa-cttgacctactctggaggagagatt 37168420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 9987379 - 9987323
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  9987379 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 9987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 20622227 - 20622283
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  20622227 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 20622283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 40282555 - 40282499
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  40282555 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 40282499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 44203807 - 44203754
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  44203807 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 44203754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 9036594 - 9036538
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  9036594 accaagagattgttcacccagttcggtccaaacttgacctactctcgaggagagatt 9036538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 8550783 - 8550833
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  8550783 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 8550833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 13316348 - 13316398
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  13316348 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 13316398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 19754739 - 19754697
Alignment:
Q  84 aatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  19754739 aatgcatagcaaaaccacaatccaacaaaaggataaacaagat 19754697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 34603874 - 34603766
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaaccta--gatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||||||||||||||||| ||||||  |||| |||  ||  || ||| |||| ||  ||| |||||||||||||||||||| |||||| | |    
T  34603874 caaccaataatcaaatgtaaataacctcaagcaccaacagcaatatatagacctagtctataat-caagtgcatagcaaaaccacaatccaaccaaggaa 34603776  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  34603775 taaacaagat 34603766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 21054136 - 21054083
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    |||||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  21054136 accaagagattggtcacccagttcggtccaaacttgacctactctggaggagag 21054083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 9109292 - 9109379
Alignment:
Q  37 aaataaccacaagcaataacaaca-acctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaa 123  Q
    ||||||||||||| |||||||||| | |||||||||| |||| || ||| ||   |||| |||||||||| |||||||| ||||||||    
T  9109292 aaataaccacaagtaataacaacagatctagatctaagctagcaaccaactgtgaagcataaccacaatcaaaccaaagaataaacaa 9109379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 3189502 - 3189452
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||| ||||||||    
T  3189502 agattgttcacccagttcggtccaaacttgacctactctggatgagagatt 3189452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 3198319 - 3198269
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||| ||||||||    
T  3198319 agattgttcacccagttcggtccaaacttgacctactctggatgagagatt 3198269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 3207158 - 3207108
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||| ||||||||    
T  3207158 agattgttcacccagttcggtccaaacttgacctactctggatgagagatt 3207108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 19752932 - 19752886
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| ||||||| |||||||||||| ||| ||||||||||||||||    
T  19752932 aacaagtgcatagtaaaaccacaatccaacaaaaggataaacaagat 19752886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 51765569 - 51765519
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | || ||||||||||||||||||||    
T  51765569 agattgttcacccagttcggtccaaacttgtcctactctggaggagagatt 51765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 6808730 - 6808657
Alignment:
Q  53 taacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||| |||||||| ||||||||| ||| || | ||||||| ||| ||| ||| |||| |||||||||||    
T  6808730 taacaacaatctagatctgatctagaaaccaagtgtaaagcaaaatcactatcaaactaaagcataaacaagat 6808657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 7482100 - 7482195
Alignment:
Q  32 aatgtaaataaccacaagcaataacaacaaccta--gatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||||||| ||||||| ||||||||  ||  || ||| |||| ||  ||| |||||||||||||||||||| |||||| | |||||||||||    
T  7482100 aatgtaaataacctcaagcaacaacaacaatatatagacctagtctataat-caagtgcatagcaaaaccacaatccaaccaaggaataaacaagat 7482195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 2390596 - 2390404
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  2390596 caaccaataaccaaatgtaaataaccacaatcaataacaacaatctagatctaatctagaaaacaaatgtatagcaaaaccacaatccaacaaaaggata 2390497  T
Q  119 aacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||       ||||||||||||| ||||||| ||||||||||| |||||| |||| ||||||| | |||||||||||||||||||||||    
T  2390496 aacaagataaagagagtagagaaaaataaacaacaacaccaagagattattcacctagttcggtccaa-cttgacctactctggaggagagatt 2390404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 8359174 - 8359362
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    ||||||||| ||||||| ||||||   ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8359174 ggcaaccaacaatcaaaagtaaat---cacaagcaacaacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaagga 8359270  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       |||||||||   ||| ||||| ||||||| | |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  8359271 taaacaagataatgagagtagagaaa---agataacaacaccaaga-aatgttcacccagttcggtccaacaatgacctactctggaggagagatt 8359362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 3259305 - 3259198
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| |||||| | |||    
T  3259305 caaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacacgggcatagcaaaaccacaatccaaccaaggaata 3259206  T
Q  119 aacaagat 126  Q
    ||||||||    
T  3259205 aacaagat 3259198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 34310571 - 34310762
Alignment:
Q  19 caaccaataatcaaatgtaaata-accacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg-a 116  Q
    |||||||||| |||||||||||| ||||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||  ||||||||| |    
T  34310571 caaccaataaccaaatgtaaatagaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggaa 34310670  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| |||||   ||| ||||| ||||| |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  34310671 taaacaagataaagagagtaaagaaa---agataacaacaccaa-agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 34310762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 29609037 - 29608940
Alignment:
Q  30 caaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagc-aaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||| |||||| | ||||||||||||||| |||||||||||||||||    
T  29609037 caaatgtaaataaccacaagcaacaacaacaatctagatctaatatagaaaccaagtgcatatcaaaaaccacaatctaagcaaaggataaacaagat 29608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 4508563 - 4508671
Alignment:
Q  19 caaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggat 117  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||  |||||||||||    
T  4508563 caaccaataaccaaatataaataaaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggat 4508662  T
Q  118 aaacaagat 126  Q
    |||||||||    
T  4508663 aaacaagat 4508671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 4510403 - 4510513
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg 115  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||| ||||||  ||| || ||    
T  4510403 ggcaaccaataaccaaatgtaaataaaccacaagcaataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatgg 4510502  T
Q  116 ataaacaagat 126  Q
    |||||||||||    
T  4510503 ataaacaagat 4510513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 4512245 - 4512355
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg 115  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||| ||||||  ||| || ||    
T  4512245 ggcaaccaataaccaaatgtaaataaaccacaagcaataacaacaatatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatgg 4512344  T
Q  116 ataaacaagat 126  Q
    |||||||||||    
T  4512345 ataaacaagat 4512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 32060315 - 32060368
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  32060315 aagagattgttcaccaagttcggtccaaacttgacctactctggaggagagatt 32060368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 35854092 - 35854036
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  35854092 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 35854036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 24790019 - 24789964
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagat 211  Q
    |||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||    
T  24790019 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagat 24789964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18388753 - 18388806
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  18388753 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 18388806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18392189 - 18392242
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  18392189 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 18392242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 22328285 - 22328354
Alignment:
Q  57 aacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||||||||| ||||| ||| |||||| ||||||||||||| ||| |||| |||||||||||    
T  22328285 aacaatctagatctaatcgagaaaccaagtgcataacaaaaccacaatcgaacaaaagaataaacaagat 22328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 25766950 - 25767006
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| |||| || | |||||||||||||||||||||||    
T  25766950 accaagagattgttcacccagttcggtctaaacttgacctactctggaggagagatt 25767006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6592333 - 6592383
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  6592333 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 6592383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6594551 - 6594601
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  6594551 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 6594601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 23555212 - 23555162
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  23555212 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 23555162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 29991225 - 29991175
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29991225 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 29991175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 39731541 - 39731491
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  39731541 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 39731491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 20344071 - 20344019
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||||  |||||||||||||||||||||||    
T  20344071 aagagattgttcacccagttcggtccaact-tgacctactctggaggagagatt 20344019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 1560656 - 1560712
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| | ||| |||| ||||||| | |||||||||||||||||||||||    
T  1560656 accaagagattggttacccagttcggtccaaacttgacctactctggaggagagatt 1560712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 43504144 - 43504200
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| | ||||| | ||||||||| |||||||||||||    
T  43504144 accaagagattgttcacccagttcgatccaaacttgacctactatggaggagagatt 43504200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 8452101 - 8452152
Alignment:
Q  63 ctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaag 114  Q
    |||||||||||||| ||| |||||| | ||||||||||||||| ||||||||    
T  8452101 ctagatctaatctaaaaatcaaatgtaaagcaaaaccacaatcgaaccaaag 8452152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 2360859 - 2360941
Alignment:
Q  44 cacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||| |||| |||  |||| ||| |||||||| ||| |||||| ||||||||||||  |||||| | |||||||||||    
T  2360859 cacaagcaacaacatcaatatagacctagtctagaaaccaagtgcatatcaaaaccacaattcaaccaaggaataaacaagat 2360941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 4178945 - 4178895
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||||||| ||| | |||||| ||||||||||||||||    
T  4178945 agattgttcacctagtttggttcaaacttgacctgctctggaggagagatt 4178895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 25616025 - 25615975
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||| || |||| ||||||| | |||||||||||||||||||||||    
T  25616025 agattgttcgcccagttcggtccaaacttgacctactctggaggagagatt 25615975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 1360048 - 1360137
Alignment:
Q  38 aataaccacaagcaataacaacaacct-agatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||||||||||||| ||||||||  | |||||||||||| |||  || || | ||||||||||||||| ||| |||| | |||||||||    
T  1360048 aataaccacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagcaaaaccacaatcgaacaaaagaagaaacaagat 1360137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 22270149 - 22270095
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||| ||||||| |||| ||||||||  |||||||||||||||||||||||    
T  22270149 accaagagat-gttcacccagttcggtccaact-tgacctactctggaggagagatt 22270095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 48408982 - 48408926
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||| |||||||||| |||| |||| || | |||| ||||||||||||||||||    
T  48408982 accaagaaattgttcacccagttcggtctaaacttgacatactctggaggagagatt 48408926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 17859 - 18050
Alignment:
Q  18 gcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg-a 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17859 gcaaccaataatcaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggaa 17958  T
Q  117 taaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| |||| | ||||| | |||||||| ||||||||||||||    
T  17959 taaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcgatccaaacttgacctaccctggaggagagatt 18050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 11384291 - 11384108
Alignment:
Q  23 caataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaaca 122  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11384291 caataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaaggataaaca 11384192  T
Q  123 agatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagat 211  Q
    ||||       ||| |||||||||||||||   ||||| | | |||||||| |||| ||||||| | | ||||||||||||||||||||    
T  11384191 agataaagagagtaaagaaaaatagacaac---accaa-aaaatgttcacccagttcggtccaa-cttaacctactctggaggagagat 11384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 40329086 - 40328980
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    ||||||| || |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40329086 caaccaacaaccaaatgtaaataaccacaagcaataacaacagtctagatctaatctagaaaacaagtgcatagcaaaaccacaatctaaccaaaggata 40328987  T
Q  119 aacaaga 125  Q
    |||||||    
T  40328986 aacaaga 40328980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 3772504 - 3772395
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||| | |||| | |||||||||||||||| |||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |    
T  3772504 ggcaaccaatcaccaaaagaaaataaccacaagcaacaacaacaatctagatttaatctagaaatcaagtgcatagcaaaaccacaatctaaccaaagaa 3772405  T
Q  117 taaacaagat 126  Q
    ||||||||||    
T  3772404 taaacaagat 3772395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 18655713 - 18655627
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    |||||||||| ||||||||||||| ||||||||||||||||||  |||||||| |||| ||| ||| ||||||||||||||||||||    
T  18655713 caaccaataaccaaatgtaaataaacacaagcaataacaacaatatagatctagtctataaaccaagtgcatagcaaaaccacaatc 18655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 4283812 - 4283727
Alignment:
Q  41 aaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||  ||||||||||||||||||||    
T  4283812 aaccacaagcaataacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat 4283727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10240417 - 10240341
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaa 113  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||| |||||||    
T  10240417 aaatagccacaaacaataacaacaatctagatctaatctagaaacgaaatgtaaagcaaaaccacaatcgaaccaaa 10240341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 2627914 - 2627858
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||| |||||| |||| ||||||| | |||||||||||||||||||||||    
T  2627914 accaagagattattcacccagttcggtccaaacttgacctactctggaggagagatt 2627858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 17982825 - 17982775
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  17982825 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 17982775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 25690129 - 25690079
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  25690129 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 25690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 31218429 - 31218379
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  31218429 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 31218379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 42498366 - 42498316
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  42498366 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 42498316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 3439678 - 3439625
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||| | |||| ||||||| | |||||||||||||||||||||||    
T  3439678 aagagattgttcatccagttcggtccaaacttgacctactctggaggagagatt 3439625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 2999727 - 2999767
Alignment:
Q  86 tgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  2999727 tgcatagcaaaatcacaatctaaccaaagaataaacaagat 2999767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 10930116 - 10930162
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||||||||||||||||| ||| |||| |||||||||||    
T  10930116 aacaagtgcatagcaaaaccacaatccaacaaaagaataaacaagat 10930162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 34254327 - 34254377
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  34254327 agattgttcacccagttcggtccaaacttgacctactctagaggagagatt 34254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 34256503 - 34256553
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  34256503 agattgttcacccagttcggtccaaacttgacctactctagaggagagatt 34256553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 40221994 - 40221948
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||||||||||||||||| |||||||| || ||||||||    
T  40221994 aacaagtgcatagcaaaaccacaatccaaccaaagaatgaacaagat 40221948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 42575317 - 42575367
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  42575317 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 42575367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 44304027 - 44303977
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| | ||||| | |||||||||||||||||||||||    
T  44304027 agattgttcacctagttcgatccaaacttgacctactctggaggagagatt 44303977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 1746216 - 1746265
Alignment:
Q  163 gattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||| |||| ||||||| | ||||||||| |||||||||||||    
T  1746216 gattgttcacccagttcggtccaaacttgacctactatggaggagagatt 1746265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 42287966 - 42288073
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagga 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||| | |    
T  42287966 ggcaaccaataaccaaatgtaaataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcatagaaaaaccacaatccaaccaaggaa 42288065  T
Q  117 taaacaag 124  Q
    ||||||||    
T  42288066 taaacaag 42288073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 7451410 - 7451322
Alignment:
Q  38 aataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||    
T  7451410 aataaccacaagcaataacaacaatctagatctaatctagaaaacaagtgcataacaaaaccacaatcgaaccaaagaataaacaagat 7451322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 17450884 - 17450780
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    ||||| |||| |||||||||||   ||||||||| |||||||| ||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17450884 caaccgataaccaaatgtaaat---cacaagcaacaacaacaatctaaacctaatctagaaaccaagtgcatagcaaaaccacaatctaaccaaaggata 17450788  T
Q  119 aacaagat 126  Q
    ||||||||    
T  17450787 aacaagat 17450780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 24398324 - 24398180
Alignment:
Q  67 atctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagatt 166  Q
    ||||||||||||||  || |||||||||||||| |||||  ||||| |  ||||||||||       ||||||||||||||| ||||| ||||||  |||    
T  24398324 atctaatctagaaactaagtgcatagcaaaaccgcaatcggaccaa-gactaaacaagataaagagagtagagaaaaatagataacaacaccaagtaatt 24398226  T
Q  167 gttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||| | |||| |||||||| |||||||||| ||| |||||||||    
T  24398225 gttcagccagttcggtccaacaatgacctactatgggggagagatt 24398180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 33648465 - 33648294
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngta 136  Q
    ||||||| || ||||| |||||||| ||||  |||||||| ||  ||| |||||||||||| ||||||  ||| |||| |||||||||||       |||    
T  33648465 aaataactacgagcaacaacaacaatctaggcctaatctataagccaagtgcatagcaaaatcacaattaaactaaagaataaacaagataaagagagta 33648366  T
Q  137 gagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||   ||||||||| ||||| | | |||| ||| |||| |||||||| ||||||||||||||||||||||||    
T  33648365 gagaaa---agacaacaacaccaata-aatgtttacccagttcggtccaacaatgacctactctggaggagagatt 33648294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 6266869 - 6266813
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  6266869 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 6266813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 45727240 - 45727136
Alignment:
Q  17 ggcaaccaataatcaaatgtaaataa-ccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaagg 115  Q
    |||||| ||||| ||||||||||||| |||||||||| ||||| ||  |||| ||| |||| |||  || |||||||||||||||||||| ||||||||     
T  45727240 ggcaactaataaccaaatgtaaataaaccacaagcaacaacaataatatagacctagtctataaactaagtgcatagcaaaaccacaatccaaccaaaga 45727141  T
Q  116 ataaa 120  Q
    |||||    
T  45727140 ataaa 45727136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 12647379 - 12647432
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  12647379 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 12647432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 32289739 - 32289686
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  32289739 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 32289686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 4503129 - 4503179
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  4503129 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 4503179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 36988072 - 36988122
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  36988072 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 36988122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 45099926 - 45099876
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  45099926 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 45099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 13656025 - 13656078
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||| ||||| |||| ||||||| | |||||||||||||||||||||||    
T  13656025 aagagattggtcacccagttcggtccaaacttgacctactctggaggagagatt 13656078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 35446809 - 35446928
Alignment:
Q  86 tgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtcca 185  Q
    |||||||||||||||||||  |||||||| |||||||||||       ||| |||||   ||| ||||| ||||||| | |||||||| |||| ||||||    
T  35446809 tgcatagcaaaaccacaattcaaccaaagcataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcggtcca 35446904  T
Q  186 accatgacctactctggaggagaga 210  Q
    | | |||||||||||||||||||||    
T  35446905 a-cttgacctactctggaggagaga 35446928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 2334414 - 2334464
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||| || |||| ||||||| | |||||||||||||||||||||||    
T  2334414 agattgttcccccagttcggtccaaacttgacctactctggaggagagatt 2334464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 4484326 - 4484376
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| ||||  |||||| | |||||||||||||||||||||||    
T  4484326 agattgttcacccagttctgtccaaacttgacctactctggaggagagatt 4484376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 6595002 - 6595052
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||  |||| ||||||| | |||||||||||||||||||||||    
T  6595002 agattgttcactcagttcggtccaaacttgacctactctggaggagagatt 6595052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 30833518 - 30833468
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| ||||  |||||| | |||||||||||||||||||||||    
T  30833518 agattgttcacccagttcagtccaaacttgacctactctggaggagagatt 30833468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 36205661 - 36205711
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | ||||||||||||||||| |||||    
T  36205661 agattgttcacccagttcggtccaaacttgacctactctggaggatagatt 36205711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 42261359 - 42261436
Alignment:
Q  37 aaataaccacaagcaataacaaca-acctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaa 113  Q
    |||||||| ||||||| ||||| | | ||||||||||||||| || ||| || ||||||||||||||| | |||||||    
T  42261359 aaataaccgcaagcaacaacaatatatctagatctaatctagcaaccaagtgtatagcaaaaccacaaacaaaccaaa 42261436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 28672085 - 28672053
Alignment:
Q  180 ggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||| ||||||||||||||||||||||||    
T  28672085 ggtccaacaatgacctactctggaggagagatt 28672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 10800 - 10693
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggata 118  Q
    ||||| |||| |||| | |||||||||||||||| |||||||| |||||| ||||||||||| ||| || |||| ||||| ||||||||| ||||| |||    
T  10800 caaccgataaccaaaagaaaataaccacaagcaacaacaacaatctagatttaatctagaaatcaagtgtatagtaaaactacaatctaatcaaagaata 10701  T
Q  119 aacaagat 126  Q
    ||||||||    
T  10700 aacaagat 10693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 16640814 - 16640903
Alignment:
Q  37 aaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||||||||||||||| ||||| || |||||| ||||||||||| |||||||||| |||||||||||| |||| |||| |||| ||||||    
T  16640814 aaataaccacaagcaacaacaaaaatctagatttaatctagaaatcaaatgcataacaaaaccacaatttaactaaagaataagcaagat 16640903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40751284 - 40751195
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaacca 111  Q
    |||||||||| ||||||||||   |||||||||||||||||||  |||| |||||||| ||| ||| ||||||||||||||||||| ||||||    
T  40751284 caaccaataaccaaatgtaaa---ccacaagcaataacaacaatatagacctaatctataaaccaagtgcatagcaaaaccacaatttaacca 40751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40763289 - 40763200
Alignment:
Q  19 caaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaacca 111  Q
    |||||||||||||||||||||   ||| |||||||||||||||  |||| |||||||| ||| ||| ||||||||||||||| ||| ||||||    
T  40763289 caaccaataatcaaatgtaaa---ccataagcaataacaacaatatagacctaatctataaaccaagtgcatagcaaaaccataatttaacca 40763200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 27637495 - 27637659
Alignment:
Q  44 cacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnnngtagagaaaa 143  Q
    ||||||||| ||||||||  |||| ||| |||| ||| ||| |||||||||||||||||||| ||| || | |||||||||||       ||| |||||     
T  27637495 cacaagcaacaacaacaatatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagagagtaaagaaa- 27637593  T
Q  144 atagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
      ||| ||||| ||||||| | | |||||| |||| |||||||| ||||||||||||| ||||||||||    
T  27637594 --agataacaacaccaaga-aatattcacccagttcggtccaacaatgacctactctgcaggagagatt 27637659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 10593436 - 10593380
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  10593436 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 10593380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 22536280 - 22536336
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  22536280 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 22536336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 29751150 - 29751206
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29751150 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 29751206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 213780 - 213693
Alignment:
Q  18 gcaaccaataatcaaatgtaaataaccacaagcaataacaacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatc 105  Q
    |||| |||||| |||||||||| |||||||||||||||||||||  |||| ||| ||||  ||  || ||||||||||||||||||||    
T  213780 gcaatcaataaccaaatgtaaaaaaccacaagcaataacaacaatatagacctagtctattaactaagtgcatagcaaaaccacaatc 213693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 13343232 - 13343182
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  13343232 agattgttcacccagttcggtccaaacatgacctactctggaggagagatt 13343182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 9789217 - 9789270
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  9789217 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 9789270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 16409650 - 16409597
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  16409650 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 16409597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 25078296 - 25078243
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  25078296 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 25078243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 25136265 - 25136212
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  25136265 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 25136212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 26170937 - 26170884
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  26170937 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 26170884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 26178057 - 26178004
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  26178057 aagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 26178004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29720542 - 29720486
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  29720542 accaagagattgttcacccagttcggtccaaacttgacctactctagaggagagatt 29720486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29722702 - 29722646
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| |||||||   |||||||||||||||||||||||    
T  29722702 accaagagattgttcacccagttcggtccaaatttgacctactctggaggagagatt 29722646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 317060 - 316885
Alignment:
Q  37 aaataaccacaagcaataacaacaac----ctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagatnnnnnn 132  Q
    |||||||||||||||| |||||| ||    |||||||| |||||| || ||| || | ||||||||||||||  |||||||| |||||||| ||          
T  317060 aaataaccacaagcaacaacaacgacagatctagatcttatctagcaaccaagtgtaaagcaaaaccacaattgaaccaaagaataaacaaaataaagag 316961  T
Q  133 ngtagagaaaaatagacaacaaaaccaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
     |||| ||||   ||| ||||| || |||| |||||| |||||||| |||||||| |||||||||||| | |||||||||    
T  316960 agtagggaaa---agagaacaacacaaaga-attgtttaccaagttcggtccaacaatgacctactctaggggagagatt 316885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 37439313 - 37439263
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  37439313 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 37439263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 40380266 - 40380216
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  40380266 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 40380216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 40382477 - 40382427
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||||||||| |||| ||||||| | ||||||||||||||||||||    
T  40382477 aagagattgttcacccagttcggtccaaacttgacctactctggaggagag 40382427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 4160758 - 4160721
Alignment:
Q  175 agtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  4160758 agtttggtccaacaatgacctactctggaggagagatt 4160721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18441641 - 18441694
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||||||||| |||| ||||||| | ||||||||||| |||||||||||    
T  18441641 aagagattgttcacccagttcggtccaaacttgacctactctagaggagagatt 18441694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16544584 - 16544534
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  16544584 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 16544534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 16546806 - 16546756
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagag 209  Q
    ||||||||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  16546806 aagagattggtcacccagttcggtccaaacttgacctactctggaggagag 16546756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 25412932 - 25412882
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| ||||  |||||| | |||||||||||||||||||||||    
T  25412932 agattgttcacccagttcagtccaaacttgacctactctggaggagagatt 25412882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 40147510 - 40147464
Alignment:
Q  80 aacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||| ||||||||||||  ||||||||||||||||||||    
T  40147510 aacaagtgcataacaaaaccacaattcaaccaaaggataaacaagat 40147464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 13239921 - 13239873
Alignment:
Q  164 attgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||| |||| |||||||   |||||||||||||||||||||||    
T  13239921 attgttcacccagttcggtccaaatttgacctactctggaggagagatt 13239873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 28278485 - 28278438
Alignment:
Q  164 attgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||| |||| ||||||||  |||||||||||||||||||||||    
T  28278485 attgttcacccagttcggtccaact-tgacctactctggaggagagatt 28278438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 11735 - 11679
Alignment:
Q  156 accaagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  11735 accaagagattgttcacccagttcggtccaaacttgacctactctggaggagagatt 11679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 1087 - 1037
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  1087 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 2600 - 2650
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  2600 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 2650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 8731 - 8781
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  8731 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 8781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 11157 - 11207
Alignment:
Q  162 agattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  11157 agattgttcacccagttcggtccaaacttgacctactctggaggagagatt 11207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 7592 - 7530
Alignment:
Q  64 tagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    |||| ||| |||| ||| ||| |||||||||||||||||||  ||||||||||||||||||||    
T  7592 tagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 3719 - 3772
Alignment:
Q  159 aagagattgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    ||||||||| ||||| |||| ||||||| | |||||||||||||||||||||||    
T  3719 aagagattggtcacccagttcggtccaaacttgacctactctggaggagagatt 3772  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 434703 - 434655
Alignment:
Q  164 attgttcaccaagtttggtccaaccatgacctactctggaggagagatt 212  Q
    |||||||||| |||| ||||||| | |||||||||||||||||||||||    
T  434703 attgttcacccagttcggtccaaacttgacctactctggaggagagatt 434655  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 490194 - 490271
Alignment:
Q  37 aaataaccacaagcaataacaaca-acctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaa 113  Q
    |||||||| ||||||| ||||| | | ||||||||||||||| || ||| || ||||||||||||||| | |||||||    
T  490194 aaataaccgcaagcaacaacaatatatctagatctaatctagcaaccaagtgtatagcaaaaccacaaacaaaccaaa 490271  T

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Target: scaffold0197 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 1291 - 1360
Alignment:
Q  57 aacaacctagatctaatctagaaaacaaatgcatagcaaaaccacaatctaaccaaaggataaacaagat 126  Q
    ||||| |||||||||||||||||| ||| || | || |||||||||||| |||||||  ||||| |||||    
T  1291 aacaatctagatctaatctagaaaccaagtgtaaagtaaaaccacaatcaaaccaaaaaataaataagat 1360  T

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