View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4030_low_61 (Length: 228)
Name: NF4030_low_61
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_61 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 18389341 - 18389498
Alignment:
| Q |
54 |
cccgaccattttccgaagtttccttgcattttgaaagtaaaattaaaatgtttcaggacaaaacaaatccttaatttgtaagatcaaagttcaatgtttc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18389341 |
cccgaccattttccgaagtttccttgcattttgaaagtaaaattaaaatgtttcaggacaaaacaaatccttaatttgtaagatcaaagttcaatgtttc |
18389440 |
T |
|
| Q |
154 |
tggcagcatcactataatggtttcttctagtgttaactcggcgcttccagtaaaccat |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18389441 |
tggcagcatcactataacggtttcttctaatgttaactcggcgcttccagcaaaccat |
18389498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University