View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4030_low_8 (Length: 510)
Name: NF4030_low_8
Description: NF4030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4030_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 12162672 - 12162180
Alignment:
| Q |
19 |
tgtcctatattataacaagaggaaagctttgagaagtactcataaaattttaattttgttaattaagttaagctgctcattgtgaccctttgtgaaaatt |
118 |
Q |
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| T |
12162672 |
tgtcctatattataacaagaggaaagctttgagaagtactcataaaattttaattttgttaattaagttaagctgctcattgtgaccctttgtgaaaatt |
12162573 |
T |
|
| Q |
119 |
tcacatttgctaacaaatcataaatacctttgtaaaataacaattaacatttgcaaataccttttgggccttgaggtattctttaacct-aaattagcct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12162572 |
tcacatttgctaacaaatcataaatacctttgtaaaataacaattaacatttgcaaataccttttgggccttgaggtattctttaacctaaaattagcct |
12162473 |
T |
|
| Q |
218 |
cttagaattcatcacctaatcttctacatgaatcaata-nnnnnnnnnnnnggtcagatagctcaaatcctctatttatagtgaaagtagttatttaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12162472 |
cttagaattcatcacctaatcttctacatgaatcaatatttttatttttttggtcagatagctcaaatcctctatttatagtgaaagtagttacttaaga |
12162373 |
T |
|
| Q |
317 |
aaattccaagcatgatctagttccctttttatcaagagattttgaaggcttttgagggcaactttattccttttctta-ttatgagacattttttctgaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
12162372 |
aaattccaagcatgatctagttccctttttatcaagagattttgaaggcttttgagggcaactttatcccttttcttatttatgagacattttttctgaa |
12162273 |
T |
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| Q |
416 |
agagaagatgtaaagttttgttcttccaggaacttttactgacatggatgggcccaattttaactgtgtttgtgtcgagatctactacctatg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12162272 |
agagaagatgtaaagttttgttcttccaggaacttttactgacatggatgggcccaattttaactgtgtttgtgtcaagatctactacctatg |
12162180 |
T |
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