View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4031_high_3 (Length: 249)
Name: NF4031_high_3
Description: NF4031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4031_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44714847 - 44715087
Alignment:
| Q |
1 |
caatagtgtaataattgtattagtttataggctatttgcaattgggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaat |
100 |
Q |
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| T |
44714847 |
caatagtgtaataattgtattagtttataggctatttgcaattgggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaat |
44714946 |
T |
|
| Q |
101 |
aaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtcattctttgcaaaagtaatgtccacag |
200 |
Q |
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| T |
44714947 |
aaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtcattctttgcaaaagtaatgtccacag |
44715046 |
T |
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| Q |
201 |
gcccaccagacatcaaaaccaaaatagttggtccctttgat |
241 |
Q |
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| T |
44715047 |
gcccaccagacatcaaaaccaaaatagttggtccctttgat |
44715087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 39090498 - 39090342
Alignment:
| Q |
75 |
acaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtc |
174 |
Q |
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| T |
39090498 |
acaaacctgggttagtggttccaaacaatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaaaatgcccataattcgaggatc |
39090399 |
T |
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| Q |
175 |
attctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttgg |
231 |
Q |
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| T |
39090398 |
attctttgcaaaagttatatctataggcccaccagacattaagaccaaaatggttgg |
39090342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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