View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4031_high_4 (Length: 240)
Name: NF4031_high_4
Description: NF4031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4031_high_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 44714568 - 44714790
Alignment:
| Q |
18 |
actctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44714568 |
actctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacaccactgtgggtgcactagataattcgtgaacaa |
44714667 |
T |
|
| Q |
118 |
aatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcattgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714668 |
aatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcattgc |
44714767 |
T |
|
| Q |
218 |
catatttgtcatggccaagtttt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44714768 |
catatttgtcatggccaagtttt |
44714790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 39091149 - 39090981
Alignment:
| Q |
75 |
ggaactgacaccaccgtgggtgcactagataattcgtgaacaaaatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatc |
174 |
Q |
| |
|
|||||||||||||| | |||||||||| |||| ||||||||| | |||||| | |||||| | |||||||||||||| || || || ||||| || | |
|
|
| T |
39091149 |
ggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaac |
39091050 |
T |
|
| Q |
175 |
tatatgttcttcctgggtaccctat---tttgcttggtctcattgccatatttgtcatggccaagtttt |
240 |
Q |
| |
|
||| ||||| || ||||||||| | | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39091049 |
gataggttctcccagggtaccctgtggatgagcttggtctcattgccatatttgtcattgccaagtttt |
39090981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University