View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4031_low_1 (Length: 315)

Name: NF4031_low_1
Description: NF4031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4031_low_1
NF4031_low_1
[»] scaffold0831 (1 HSPs)
scaffold0831 (38-315)||(3036-3313)
[»] chr7 (6 HSPs)
chr7 (129-223)||(329531-329626)
chr7 (129-223)||(10932496-10932591)
chr7 (150-237)||(15035176-15035266)
chr7 (129-226)||(11321821-11321919)
chr7 (279-315)||(32966282-32966318)
chr7 (163-226)||(40753250-40753314)
[»] chr2 (9 HSPs)
chr2 (129-226)||(38623239-38623337)
chr2 (129-223)||(18685893-18685988)
chr2 (129-223)||(6896225-6896320)
chr2 (129-223)||(44284686-44284781)
chr2 (129-223)||(9732868-9732963)
chr2 (129-223)||(32766442-32766537)
chr2 (129-223)||(42706416-42706511)
chr2 (129-226)||(19513624-19513722)
chr2 (129-226)||(41366045-41366143)
[»] chr6 (4 HSPs)
chr6 (138-223)||(11675351-11675437)
chr6 (129-225)||(15276912-15277009)
chr6 (129-223)||(3932784-3932879)
chr6 (283-315)||(24356285-24356317)
[»] scaffold0650 (1 HSPs)
scaffold0650 (129-223)||(1587-1682)
[»] chr8 (6 HSPs)
chr8 (129-223)||(40389097-40389192)
chr8 (149-226)||(29611005-29611083)
chr8 (129-223)||(15001523-15001618)
chr8 (129-223)||(37618345-37618440)
chr8 (138-226)||(27104025-27104114)
chr8 (163-223)||(30501236-30501297)
[»] chr5 (8 HSPs)
chr5 (129-223)||(8560926-8561021)
chr5 (163-226)||(5598571-5598635)
chr5 (129-223)||(7523229-7523324)
chr5 (149-223)||(18470372-18470447)
chr5 (129-223)||(28090464-28090559)
chr5 (129-222)||(4818085-4818179)
chr5 (163-223)||(4689642-4689703)
chr5 (129-221)||(39788250-39788343)
[»] chr4 (8 HSPs)
chr4 (129-223)||(50729473-50729568)
chr4 (129-223)||(25978543-25978637)
chr4 (149-223)||(11056122-11056197)
chr4 (129-223)||(23521940-23522035)
chr4 (129-223)||(24210379-24210474)
chr4 (129-223)||(36885992-36886087)
chr4 (138-223)||(4325860-4325946)
chr4 (138-223)||(26083408-26083494)
[»] chr3 (10 HSPs)
chr3 (129-223)||(49748843-49748938)
chr3 (163-223)||(3864607-3864668)
chr3 (129-223)||(12349103-12349198)
chr3 (129-223)||(19906820-19906915)
chr3 (129-223)||(24571339-24571434)
chr3 (129-223)||(25860353-25860448)
chr3 (129-223)||(39052770-39052865)
chr3 (129-223)||(50678856-50678951)
chr3 (129-223)||(51925140-51925235)
chr3 (283-315)||(47104391-47104423)
[»] chr1 (9 HSPs)
chr1 (129-223)||(11772645-11772740)
chr1 (129-226)||(16451193-16451291)
chr1 (163-223)||(28340316-28340377)
chr1 (129-223)||(6029314-6029409)
chr1 (129-223)||(51264561-51264656)
chr1 (163-223)||(17888048-17888109)
chr1 (163-223)||(26118228-26118289)
chr1 (163-226)||(16704826-16704890)
chr1 (279-315)||(32168539-32168575)
[»] scaffold0098 (1 HSPs)
scaffold0098 (140-223)||(51506-51590)
[»] scaffold0280 (1 HSPs)
scaffold0280 (138-223)||(13631-13717)
[»] scaffold0025 (1 HSPs)
scaffold0025 (162-223)||(5383-5445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (163-223)||(15263-15324)


Alignment Details
Target: scaffold0831 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 38 - 315
Target Start/End: Complemental strand, 3313 - 3036
Alignment:
Q  38 acttcgcgtgtattacatgaccaatttgaacaattaaccatttatattattatcgaaaattagtttccttgaaatttaaatttgaataatctgtgatgta 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||     
T  3313 acttcgcgtgtattacatgaccaatttgaacaattaaccatttatattattatcgaaaattagtttccttgaaatttaaatttgaacaatttgtgatgtg 3214  T
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgccctgaagcagttttacaaatcaaacattgtatagttagag 237  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||| |||    
T  3213 gttttgtgagagacaataatttcattttttgtcttcccctttgcttccagtttgtcttgccctgaagtacttttacaaatcaaacactgtacagttggag 3114  T
Q  238 ctattacttgccttgctttgagtttgtcttgccctcaagtaagtttttactccttccgttcctttttaattgtcactt 315  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3113 ctattacttgccttgtttcgagtttgtcttgccctgaagtaagtttttactccctccgttcctttttaattgtcactt 3036  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 329531 - 329626
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||||||| |||| ||||| ||||| ||||||| |||||||||| |||||||| ||||||||||  || ||||||| |||||||||||||||||||    
T  329531 tgtgatgtggtttggtgagggacaaaaatttcagtttttgtcttgtcctttgcctccagtttgttctgtccctgaaacagttttacaaatcaaaca 329626  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 10932591 - 10932496
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| |||||||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  10932591 tgtgttgtagtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 10932496  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 15035266 - 15035176
Alignment:
Q  150 acaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcag--ttttacaaatcaaacattgtatagttagag 237  Q
    |||| ||||||| |||| ||| | |||||||||||||||||||| || || || |||||  |||||||||| |||||||||||| ||||||    
T  15035266 acaagaatttcaattttcgtcctgtcctttgcttccagtttgtcctgtccttggagcagttttttacaaattaaacattgtataattagag 15035176  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 11321919 - 11321821
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  11321919 tgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtccgttgcctccagtttgtcctgtacctgaatcagttttacaaatcaaacattg 11321821  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 32966318 - 32966282
Alignment:
Q  279 agtttttactccttccgttcctttttaattgtcactt 315  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  32966318 agtttttactccctccgttcctttttaagtgtcactt 32966282  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 40753250 - 40753314
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||||||| | ||| |||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  40753250 tttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacattg 40753314  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 38623337 - 38623239
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||||| ||| |||| || |||||||| || ||||||| ||||||||||||||||||||||    
T  38623337 tgtgctgtggtttggtgagggacaaaaatttcagtttttgtcttttccattgcctcaagtttgtcctgtccctgaaacagttttacaaatcaaacattg 38623239  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 18685893 - 18685988
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||||||||| ||| | | |||||||||| |||||||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  18685893 tgtgctgtggtttggtgagagacaaaaatatgagtttttgtcttgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 18685988  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 6896225 - 6896320
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||||||| ||||| || | ||| |||| |||||||||| ||| ||||||| |||||||||||||||||||    
T  6896225 tgtgctgttgtttggtgagggacaaaaatttcagtttttatcctgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaaca 6896320  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 44284686 - 44284781
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||||| ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  44284686 tgtgctgtggtttagtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 44284781  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 9732963 - 9732868
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  9732963 tgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 9732868  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 32766537 - 32766442
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| ||| |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  32766537 tgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaaca 32766442  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 42706416 - 42706511
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  42706416 tgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttatcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 42706511  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 19513722 - 19513624
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||| | |||||||| ||| ||||||| ||  |||||| ||||||||||||||||||||||    
T  19513722 tgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcctttgcctcccgtttgtcctgtacctgaaacagttttacaaatcaaacattg 19513624  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 41366143 - 41366045
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||| | ||  |||| ||||||||||| || ||||||| | |||| |||||||||||||||    
T  41366143 tgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctatctcttgcctccagtttgtcatgtccctgaaactgtttcacaaatcaaacattg 41366045  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 11675437 - 11675351
Alignment:
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||||||||||| ||| ||| |||||||| | |||||||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  11675437 gtttggtgagagacaaaaatatcagtttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 11675351  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 15277009 - 15276912
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacatt 225  Q
    |||||||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||||    
T  15277009 tgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacatt 15276912  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 3932879 - 3932784
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| |||| ||||||||||| ||| | | |||||||| |  || |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  3932879 tgtgatgtggtttggtgagagacaaaaatatgagtttttgtcctgccccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 3932784  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 24356317 - 24356285
Alignment:
Q  283 tttactccttccgttcctttttaattgtcactt 315  Q
    |||||||| ||||||||||||||||||||||||    
T  24356317 tttactccctccgttcctttttaattgtcactt 24356285  T

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Target: scaffold0650 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 1682 - 1587
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgt-cttgccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||||| ||| |||| |||||||||| ||  || |||| |||||||||||||||||||    
T  1682 tgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagtttgtcctatccttgaaacagttttacaaatcaaaca 1587  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 40389097 - 40389192
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| |||||||| || ||| ||| |||||||| | |||||||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  40389097 tgtgctgtggtttggtgagagataaaaatatcagtttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 40389192  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 29611083 - 29611005
Alignment:
Q  149 gacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaacattg 226  Q
    ||||| ||||||| |||||||| | ||| |||| ||||||||||  || ||||||| ||||||||||||||||||||||    
T  29611083 gacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacattg 29611005  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 15001523 - 15001618
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||  | ||  |||| ||||||||||| || ||||||| |||||||||||||||||||    
T  15001523 tgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtttgtcctgtccctgaaacagttttacaaatcaaaca 15001618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 37618440 - 37618345
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| ||| |||||||| | |||||||| |||| |||||| ||  |||||| |||||||||||||||||||    
T  37618440 tgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcctttgcctccaatttgtcctgtacctgaaacagttttacaaatcaaaca 37618345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 27104025 - 27104114
Alignment:
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  27104025 gtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacattg 27104114  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 30501236 - 30501297
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  30501236 tttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 30501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 8561021 - 8560926
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgcc-ctgaagcagttttacaaatcaaaca 223  Q
    |||||||| |||| |||||  |||| ||| ||| |||||||||| |||||||||| ||||||||| ||   ||||| |||||||||||||||||||    
T  8561021 tgtgatgtggtttggtgaggaacaaaaatatcagtttttgtcttgtcctttgctttcagtttgtcctgtatctgaaacagttttacaaatcaaaca 8560926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 5598571 - 5598635
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||||||| ||||| |||| |||||||||||| |  |||||| ||||||||||||||||||||||    
T  5598571 tttttgtcctctcccttgcctccagtttgtctcgtacctgaaacagttttacaaatcaaacattg 5598635  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 7523229 - 7523324
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  7523229 tgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 7523324  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 18470447 - 18470372
Alignment:
Q  149 gacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    ||||| ||||||| |||||||||| ||| |||| | ||||||||  || ||||||| |||||||||||||||||||    
T  18470447 gacaaaaatttcagtttttgtcttgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaaca 18470372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 28090559 - 28090464
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| |||||||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||| ||||  |||||| |||||||||||||||||||    
T  28090559 tgtgttgtagtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgccttgtacctgaaacagttttacaaatcaaaca 28090464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 4818179 - 4818085
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaac 222  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||||| | | |||| ||||||||||||||  |||||| ||||||||||||||||||    
T  4818179 tgtgctgtggtttggtgagggacaaaaatatgagtttttgtcttgttccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaac 4818085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 4689703 - 4689642
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  4689703 tttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 4689642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 39788250 - 39788343
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaa 221  Q
    |||||||| |||| ||||| ||||| ||| | | |||||||| | |||||||| | ||||||||| ||  |||||| |||||||||||||||||    
T  39788250 tgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcctttgcctacagtttgtcctgtacctgaaacagttttacaaatcaaa 39788343  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 50729568 - 50729473
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| |||| |||||| ||||||| |||||||| | ||| |||| ||||||||||  || ||||||| |||||||||||||||||||    
T  50729568 tgtgctgtggtttggtgatagacaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaaca 50729473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 25978637 - 25978543
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgccctgaagcagttttacaaatcaaaca 223  Q
    |||||| | |||| ||||| ||||| ||||||| |||||||| | | | |||| |||| |||||| || |||||| |||||||||||||||||||    
T  25978637 tgtgatatggtttggtgagggacaaaaatttcagtttttgtcctgttcattgcctccaatttgtcatgtcctgaaacagttttacaaatcaaaca 25978543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 11056122 - 11056197
Alignment:
Q  149 gacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    ||||| ||| ||| |||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  11056122 gacaaaaatatcagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 11056197  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 23521940 - 23522035
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||| | ||| |||||||||||||||| ||  |||||| |||||||||||||||||||    
T  23521940 tgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatcccttgcttccagtttgtcctgtacctgaaacagttttacaaatcaaaca 23522035  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 24210379 - 24210474
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||||||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  24210379 tgtgctgtggtttggtgagggacaataatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 24210474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 36885992 - 36886087
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  36885992 tgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 36886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 4325860 - 4325946
Alignment:
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||||||||||| ||| | | ||||| || | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  4325860 gttttgtgagagacaaaaatatgagtttttctcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaaca 4325946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 26083408 - 26083494
Alignment:
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||||| ||||| ||||||| |||||||| | ||| |||| ||||||||||  || ||||||| || ||||||||||||||||    
T  26083408 gtttggtgagggacaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaaca 26083494  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 49748938 - 49748843
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| ||| |||||||| | |||||||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  49748938 tgtgttgtggtttggtgagggacaaaaatatcagtttttgtcatgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 49748843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 3864668 - 3864607
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| | |||||||| ||||||||||||||  |||||| |||||||||||||||||||    
T  3864668 tttttgtcctgtcctttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 3864607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 12349198 - 12349103
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||||||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  12349198 tgtgctgtggtttggtgagagacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 12349103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 19906820 - 19906915
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||| | ||| |||| ||||||||||  || ||||||| || ||||||||||||||||    
T  19906820 tgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaaca 19906915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 24571339 - 24571434
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  24571339 tgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 24571434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 25860448 - 25860353
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| |||| ||||| ||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  25860448 tgtgatgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 25860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 39052865 - 39052770
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||||||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  39052865 tgtgttgtggtttggtgagagacaaaaatatgagtttttgtcctgtccattgcctccagtttgtcctgtgcctgaaacagttttacaaatcaaaca 39052770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 50678856 - 50678951
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||||||||| ||| ||| |||||||| | | |||||| ||||||||||| ||  |||||| ||||||| |||||||||||    
T  50678856 tgtgttgtggtttggtgagagacaaaaatatcagtttttgtcctgttctttgcctccagtttgtcctgtacctgaaacagtttttcaaatcaaaca 50678951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 51925235 - 51925140
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| ||| |||||||| | |||||||| ||||||||||| ||  |||||| ||||||||||||| |||||    
T  51925235 tgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcctttgcctccagtttgtcatgtacctgaaacagttttacaaattaaaca 51925140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 47104423 - 47104391
Alignment:
Q  283 tttactccttccgttcctttttaattgtcactt 315  Q
    |||||||| ||||||||||||||||||||||||    
T  47104423 tttactccctccgttcctttttaattgtcactt 47104391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 11772740 - 11772645
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| ||| |||||||||| |||||||| ||||| ||| ||||  |||||| |||||||||||||||||||    
T  11772740 tgtgctgtggtttggtgagggacaaaaatatcagtttttgtcttgtcctttgcctccagattgccttgtacctgaaacagttttacaaatcaaaca 11772645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 16451193 - 16451291
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||| ||| |||| ||||||||||| ||| | | |||||||| | ||| |||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  16451193 tgtgttgtggtttggtgagagacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacattg 16451291  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 28340377 - 28340316
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||||| ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  28340377 tttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 28340316  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 6029409 - 6029314
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||||||| |||||||| | ||| |||| | ||||||||  || ||||||| |||||||||||||||||||    
T  6029409 tgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaaca 6029314  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 51264561 - 51264656
Alignment:
Q  129 tgtgatgtagttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||| ||| |||| ||||| ||||| ||| | | |||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  51264561 tgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 51264656  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 17888048 - 17888109
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  17888048 tttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 17888109  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 26118289 - 26118228
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| | |||||||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  26118289 tttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 26118228  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 16704826 - 16704890
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaacattg 226  Q
    |||||||| | ||| |||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  16704826 tttttgtcgtgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaacattg 16704890  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 32168575 - 32168539
Alignment:
Q  279 agtttttactccttccgttcctttttaattgtcactt 315  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32168575 agtttatactccctccgttcctttttaattgtcactt 32168539  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 51506 - 51590
Alignment:
Q  140 tttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||| ||||| ||| | | |||||||||| ||| |||| ||||||||||  ||| |||||| |||||||||||||||||||    
T  51506 tttgtgagggacaaaaatatgagtttttgtcttgtcccttgcatccagtttgttctgcacctgaaacagttttacaaatcaaaca 51590  T

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Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 13717 - 13631
Alignment:
Q  138 gttttgtgagagacaataatttcattttttgtcttctcctttgcttccagtttgtcttg-ccctgaagcagttttacaaatcaaaca 223  Q
    |||| ||||| ||||| ||||||| |||||||| | ||| |||| ||||||||||  || ||||||| || ||||||||||||||||    
T  13717 gtttggtgagggacaaaaatttcagtttttgtcctatcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaaca 13631  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 5445 - 5383
Alignment:
Q  162 ttttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    ||||||||| | ||| |||| ||||||||||||||  |||||| |||||||||||||||||||    
T  5445 ttttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 5383  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 15263 - 15324
Alignment:
Q  163 tttttgtcttctcctttgcttccagtttgtcttgc-cctgaagcagttttacaaatcaaaca 223  Q
    |||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||||||||||||    
T  15263 tttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 15324  T

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